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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattgcattcagtttgtttgattattctgtaatctacacacacacttctaatgctatatctgttcctattgggggtgccagGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCAT

Basic information

species Glycine max
transcript GLYMA05G32900.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32900.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G08740.1 (Arabidopsis thaliana), 3'ss of exon 9
gtactattgcattcagtttgtttgattattctgtaatctacacacacacttctaatgctatatctgttcctattgggggtgccagGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCAT
    ||   |    ||  | ||| | |  |||||    |  | ||| |  | ||| ||| | | |  || | || |      |||||||||||| ||||||||||||||||| || |||||| | |||||||| || || || ||||| ||||| ||||| ||  | |||||| | |||||||| 
---gtaaaactaatagacttttt-actgatctgtgtattgaaaacagaagtttaa-gctctgtttaatcttgtttg------cagGTTTCAGAACCTAGGTGAGATGATGACTCTTGGAAGATATGATGCTGCTATATCGCCAAGTTTCATTGAAGGGCTTACACTTGAAGGTCCAATTGGTCAC

upper sequence: GLYMA05G32900.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0031g02690.t01 (Vitis vinifera), 3'ss of exon 9
-----------------gtactattgcattcagtttgtttgattattctgtaatctacacacacacttctaatgctatatctgttcct-attgggggtgccagGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCAT
                  || | ||  ||  | |   ||| || |    ||||  | || | | |    |  || || ||  | |  | | |     || ||||||||||||| | |||||||||||||| || |||||||| |||||||| ||||| ||||| || ||||| ||||| ||||| || ||  | ||||| |||
ggtcaaaattaaatttgctaatgttttatgaaatgcattt-atgag--agtaacatccaaaaaaaacaatgttggtagatgagctggtgactttctttgtcagGTTTCAGAATTTGGGTGAGATGATGACTCTAGGAAGAAATGATGCTGCTATTTCCCCGAGCTTCATTGAGGGGCTAACCTTGGAGGGACCTATTGGCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334785|gb|CO978651.1|CO978651
EST:     GGTTGGAATTTGTGGGCTGCAATCAATGGGCGTCCACTTTTACCATTTAG                         GTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCAT
genomic: GGTTGGAATTTGTGGGCTGCAATCAATGGGCGTCCACTTTTACCATTTAGgtactattgc ... ggggtgccagGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtaatctacacacacacttctaatgctatatctgttcctattgggggtgccagGTTTCAGAATCTAGGTGAGATGATGACCCTGGGAAGAAACGATGCTGCCATTTCTCCGAGTTTTATTGATGGGCTGACCTTAGAAGGTTCCATTGGTCAT
                   ttctaat  putative branch site (score: 2)
                   ttctaat  TA-rich tract