1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctataattttatctcctttcagacagtgggtttttcagatgatcaaaatgtgattaacatgaaaatattcctgggcattctaacacatcaaaattgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCA
species | Glycine max |
transcript | GLYMA04G06760.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAG ATATTCCCACAAAA-GATGCCTCCGGGAGCTATTGATCTTGCATCCCGGCTEST: gi|13252463|gb|BG363374.1|BG363374
genomic: ATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttgtgtgtagATATTCC-ACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCT
EST: ATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAG ATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGEST: gi|26058288|gb|CA801202.1|CA801202
genomic: ATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTG
EST: CTCAGATAAAAGCACACCCATGGCACAAG ATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGEST: gi|14126759|gb|BG791197.1|BG791197
genomic: CTCAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTG
EST: CATGGCACAAG ATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGEST: gi|9563873|gb|BE473382.1|BE473382
genomic: CATGGCACAAGgtctataatt ... ttgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTG
EST: TTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAG ATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGEST: gi|193656042|gb|FK606672.1|FK606672
genomic: TTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTG
EST: ATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAG ATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTG
genomic: ATTACAATGACTTTAGGTTTCCTCAGATAAAAGCACACCCATGGCACAAGgtctataatt ... ttgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTG
tgtgattaacatgaaaatattcctgggcattctaacacatcaaaattgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCA
ttctaac putative branch site (score: 1)
ttaacatgaaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctataattttatctcctttcagacagtgggtttttcagatgatcaaaatgtgattaacatgaaaatattcctgggcattctaacacatcaaaattgtgtgtagATATTCCACAAAAAGATGCCTCCGGAAGCTATTGATCTTGCATCCCGGCTGTTGCAATACTCCCCAAGTCTCCGGTGCACTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT