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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccttgtatatcaaatttgtaggcttgcagttttggttttgaatgttaaaaaagttaacccccccccccccccctcttctttctagACCGATAATGTTGAGGAGATAGCTCTAAAGATTTCCCAGTGGCCAAAGGCATCAGGACTACACAAAAGGATAACTGTCATCACACAGGGTGTGGATCCTG

Basic information

species Glycine max
transcript GLYMA03G33910.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254342531|gb|GR858693.1|GR858693
EST:     TCGGATATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAG                         ACCGATAATGTTGAGGAGATAGCTCTAAAGATTTCCCAGTGGCCAAAGGCA
genomic: TCGGATATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttctttctagACCGATAATGTTGAGGAGATAGCTCTAAAGATTTCCCAGTGGCCAAAGGCA
EST: gi|6482402|gb|AW201663.1|AW201663
EST:     TCGGATATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGNGAG                         ACCGATAATGTTGAGGAGATAGCTTCTAAAGATTTCCCAGTGGCCAAAGGC
genomic: TCGGATATGAGACTGAAGCAAGAACATTTTCTAAAGTTCATGGCTGGGAGgtaagccttg ... ttctttctagACCGATAATGTTGAGGAGATAGCT-CTAAAGATTTCCCAGTGGCCAAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttttgaatgttaaaaaagttaacccccccccccccccctcttctttctagACCGATAATGTTGAGGAGATAGCTCTAAAGATTTCCCAGTGGCCAAAGGCATCAGGACTACACAAAAGGATAACTGTCATCACACAGGGTGTGGATCCTG
                     agttaac  putative branch site (score: 3)
                       ttaacccccccccccc  CT-rich tract
     ttttgaatgttaaaaa  TA-rich tract