1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cttaaaaaaatacgtaaagttagcttgtttttttgtaggcatattgacgtgaccctttctgtttaattatttggttctgaaaccttattcatttctgtagGTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCAAAGAACTACATATATTTGCACTTACCACAG
species | Glycine max |
transcript | GLYMA02G13780.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCG GCTTGTTATGATAGGAGCAAAG-TGCAGCAGATCACGATCCTA-CTACAGCEST: gi|58015700|gb|CX702442.1|CX702442
genomic: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCGgtatgtttca ... atttctgtagGTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCC-AGCTACAGC
EST: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCG GTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCAEST: gi|42722614|gb|CK768513.1|CK768513
genomic: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCGgtatgtttca ... atttctgtagGTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCA
EST: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCG GTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCAEST: gi|58015403|gb|CX702145.1|CX702145
genomic: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCGgtatgtttca ... atttctgtagGTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCA
EST: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCG GTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCA
genomic: CCATACCTTGCAGTACATTTAATAATGATGGCTCCATATTTGCTTATGCGgtatgtttca ... atttctgtagGTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCA
gacgtgaccctttctgtttaattatttggttctgaaaccttattcatttctgtagGTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCAAAGAACTACATATATTTGCACTTACCACAG
ccttattcatttct CT-rich tract
tttctgtttaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttaaaaaaatacgtaaagttagcttgtttttttgtaggcatattgacgtgaccctttctgtttaattatttggttctgaaaccttattcatttctgtagGTTTGTTATGATTGGAGCAAAGGTGCAGAAAATCACAATCCAGCTACAGCAAAGAACTACATATATTTGCACTTACCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- -aaaaaaa
- - - - - - - - - - - gcttgtt
- - - - - - - - - - - - - - - - - - - - - - tgacgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttctg