Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttaaataaacatcatccttctagaacatttgcttttagttatgtcacttgagaatagtttaatttgcattgttgtgttgcatatgttctgcaatctttgcccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG

Basic information

species Glycine max
transcript GLYMA02G01750.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396184|gb|AI495181.1|AI495181
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|208084149|gb|GD881425.1|GD881425
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGAGTTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTT
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGA-TTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTT
EST: gi|207685540|gb|GD670314.1|GD670314
EST:     GGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCAC-GGAAGAGGTTACTTGGAAAGCTGCCAAGAATTACTTGGAAAAAGGT
genomic: GGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGA-TTTACTT-GAAAGCTGCCAAGAATTACTTGGAAAAAGGT
EST: gi|254328074|gb|GR835039.1|GR835039
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|192331369|gb|FK021037.1|FK021037
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTTTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|57575003|gb|CX547978.1|CX547978
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|193513366|gb|FK471474.1|FK471474
EST:     AAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCAC-GGAAGAGTTACTTG-AAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: AAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|9901204|gb|BE610172.1|BE610172
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGACAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|207730076|gb|GD708336.1|GD708336
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAG
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAG
EST: gi|58016979|gb|CX703721.1|CX703721
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|15812447|gb|BI784722.1|BI784722
EST:     GAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: GAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|6481679|gb|AW200950.1|AW200950
EST:     TACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|254345056|gb|GR855713.1|GR855713
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|85056960|gb|DW585092.1|DW585092
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|192333635|gb|FK026880.1|FK026880
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTTTGCCTCAAG                         GCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|208094210|gb|GD891555.1|GD891555
EST:     TTACCCGAAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GCACGGGAAGA-TTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
genomic: TTACCCG-AATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTC
EST: gi|208233052|gb|GE032805.1|GE032805
EST:     TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAG                         GTACGGGAAGATTTACTTGAAAGCTGCCAAGAATTAC
genomic: TTTACCCGAATGGAAGAGGAAGTTGAGAAGCTGAAGGGTTCTGCCTCAAGgtaacttaaa ... ttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG
                            tactaat  putative branch site (score: 1)
                          tctactaatccttttt  CT-rich tract
                               taatcctttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacttaaataaacatcatccttctagaacatttgcttttagttatgtcacttgagaatagtttaatttgcattgttgtgttgcatatgttctgcaatctttgcccaaaataagaaactagatgcggtaatctactaatccttttttttttatcattagGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAGGTTCTGATTATGCTAAGAACGAAATCCAGCGCCTACAGCGCATACTTGACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC