1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgcattcttcctctattatattatctgtgctctagtacatacattaccctatcgctattattttctttatttctatttgcttatttatggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCAC
species | Glycine max |
transcript | GLYMA02G00750.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTEST: gi|193718862|gb|FK655240.1|FK655240
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: TTGATAAATTCTCCAGAAANAGCAGA ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTEST: gi|13562521|gb|BG550741.1|BG550741
genomic: TTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTEST: gi|254328398|gb|GR835363.1|GR835363
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTEST: gi|254328006|gb|GR834971.1|GR834971
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: A-TGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTEST: gi|193568019|gb|FK524356.1|FK524356
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGA ATACTTTACAGTACTTGTCAATACGGACATGAGTCTACATTCAATGGAAGTEST: gi|214007170|gb|DB990497.1|DB990497
genomic: ATTGCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
EST: GCAGTTGACGTTCTCACTAAGTTGATAAAGAGTCCAGAAATAGCAGA ATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
genomic: GCAGTTGACGTTCTCACTAAGTTGATAAATTCTCCAGAAATAGCAGAgtatgcattc ... atggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGT
cattaccctatcgctattattttctttatttctatttgcttatttatggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCAC
tattattttctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcattcttcctctattatattatctgtgctctagtacatacattaccctatcgctattattttctttatttctatttgcttatttatggatacagATACTTTACAGTACTTGTCAATATGGACATGAGTCTACATTCAATGGAAGTTGTGAACAGGCTGACAACAGCTGTTGAACTACCATCTCAATTCATTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT