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gtatgtaacacacgcatgcaattttattttttaaatttccctggtgaaaaatctggtgctggctctaagcacttgatgatataattataatagcctctcaggatatgttaaataccatcttcagGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAATGCAAGCTGTCCTTTGATG
species | Glycine max |
transcript | GLYMA01G01390.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGG GGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACEST: gi|207788016|gb|GD759700.1|GD759700
genomic: GTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGgtatgtaaca ... ccatcttcagGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCAC
EST: GTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGG GGGTTGGAAGGTTGTATCAATAACACGGGGACAAAGCCCAACATGATCGCAEST: gi|16277496|gb|BI942413.1|BI942413
genomic: GTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGgtatgtaaca ... ccatcttcagGGGTTGGAAGGTTGTATCAATA-CACGGGGACAAAGCCCAACATGATCGCA
EST: ACGAGTTGAAAATATGCTTCAAGAAGG GGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACEST: gi|9983884|gb|BE657992.1|BE657992
genomic: ACGAGTTGAAAATATGCTTCAAGAAGGgtatgtaaca ... ccatcttcagGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCAC
EST: GNNTTGTACAAATTGGAAGCCAAACGAGTNGAAAATATGCTTCAAGAAGG GGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCAC
genomic: GTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGgtatgtaaca ... ccatcttcagGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCAC
cacttgatgatataattataatagcctctcaggatatgttaaataccatcttcagGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAATGCAAGCTGTCCTTTGATG
acttgat putative branch site (score: 5)
ccatcttc putative PPT
atgatataattataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaacacacgcatgcaattttattttttaaatttccctggtgaaaaatctggtgctggctctaagcacttgatgatataattataatagcctctcaggatatgttaaataccatcttcagGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAGGCACTCTCATTGTTCAAGAATGCAAGCTGTCCTTTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG