1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attgtttttcatttcatggctaaggtttttcccctcctatatggaatttattgctgctggaggggctgatcatttatggtattttgttcacaatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAG
species | Glycine max |
transcript | GLYMA19G45140.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGNTGGC-ACTAACAG GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAEST: gi|192295887|gb|FG992653.1|FG992653
genomic: -ATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: GATGGGTTTGATGCTCGTGGAAACATCGAAGTCTTGATGGCAACTAACAG GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAEST: gi|254320309|gb|GR831117.1|GR831117
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAEST: gi|254338829|gb|GR847546.1|GR847546
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAEST: gi|254337400|gb|GR849353.1|GR849353
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAEST: gi|254337401|gb|GR849354.1|GR849354
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAEST: gi|192300594|gb|FG988891.1|FG988891
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
EST: GGCAACTAACAG GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
atttattgctgctggaggggctgatcatttatggtattttgttcacaatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAG
ggctgat putative branch site (score: 4)
tttcc putative PPT
atttatggtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtttttcatttcatggctaaggtttttcccctcctatatggaatttattgctgctggaggggctgatcatttatggtattttgttcacaatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAG
- - - - - - - catggct
- - - - - - - - - - - - - - - cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - ttgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagggg