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gtaaggaagctaattagtttcaccctatttttcattgcttatcttttgaaaaccaaattgtctatggcagTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAG
species | Glycine max |
transcript | GLYMA19G07410.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCT TGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAEST: gi|7146181|gb|AW508166.1|AW508166
genomic: CAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTgtaaggaagc ... tctatggcagTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGA
EST: CAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCT TGGGTGGAAGAAATANGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAEST: gi|193651239|gb|FK599436.1|FK599436
genomic: CAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTgtaaggaagc ... tctatggcagTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGA
EST: CAGCACCTTTTT-GAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCT TGGGTGGAAAGAAATAGEST: gi|9983263|gb|BE657371.1|BE657371
genomic: CAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTgtaaggaagc ... tctatggcagTGGGTGGAA-GAAATAG
EST: CAGCNNCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCT TGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGA
genomic: CAGCACCTTTTTTGAGAGCTGTGGTGTAGCTGACCTTATCACAACATGCTgtaaggaagc ... tctatggcagTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGA
agtttcaccctatttttcattgcttatcttttgaaaaccaaattgtctatggcagTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAG
ttatcttttgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaagctaattagtttcaccctatttttcattgcttatcttttgaaaaccaaattgtctatggcagTGGGTGGAAGAAATAGGAAAGTTGCTGAGGCTTATGCAAGGAATGGAGGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA