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...acaaagtaacaaaagtgaaatttcttttgcacttgtcttaagttattattcttgggatggttttggtgagaacttaatgattatgtgttctgatattgcaGATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAAGAATAGGAGATTGCTCCTGACTCAGCAAGCACCATGACTATTCACTGTG
species | Glycine max |
transcript | GLYMA18G08420.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATG GATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAAEST: gi|31466953|gb|CD408981.1|CD408981
genomic: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATGggtatttctc ... tgatattgcaGATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAA
EST: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATG GATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAAEST: gi|10235626|gb|BE804514.1|BE804514
genomic: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATGggtatttctc ... tgatattgcaGATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAA
EST: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATG GATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAAEST: gi|31561695|gb|CD487533.1|CD487533
genomic: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATGggtatttctc ... tgatattgcaGATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAA
EST: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATG GATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAA
genomic: TTTCAAGGCAAATTGCGCTCTTGTAATCATTGATTTCCTGTTTCGACATGggtatttctc ... tgatattgcaGATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAA
ttattcttgggatggttttggtgagaacttaatgattatgtgttctgatattgcaGATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAAGAATAGGAGATTGCTCCTGACTCAGCAAGCACCATGACTATTCACTGTG
ttctgat putative branch site (score: 3)
aacttaatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaagtaacaaaagtgaaatttcttttgcacttgtcttaagttattattcttgggatggttttggtgagaacttaatgattatgtgttctgatattgcaGATACATCACTCCTGAATATGATGGATATTTGGATCTCCTACGAAGCTTAAGAATAGGAGATTGCTCCTGACTCAGCAAGCACCATGACTATTCACTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -aacaaaa
- - - - - - - - - - - - - -tgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc