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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaaattttacatgttggatatccattctcttgttgatatgccatcctccacttggctatccatttacatgttggatatccatttattttttcagtacatatttttcagGTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGATTCCTGTTCCAAAACAAACAGCAAAAACAAATTTCACAGTTACATCTG

Basic information

species Glycine max
transcript GLYMA17G16630.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16630.2 (Glycine max), 3'ss of exon 8
lower sequence: AT5G46630.1 (Arabidopsis thaliana), 3'ss of exon 9
gtttgaaattttacatgttggatatccattctcttgt-tgatatgccatcctccacttggctatccatttacatgttggatatccatttattttttcagtacatatttttcagGTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGATTCCTGTTCCAAAACAAACAGCAAAAACAAATTTCACAGTTACATCTG
                  |  ||| |  |||||  |  | | | |  |      | ||||||     ||| |    |    |||| ||    | ||  ||      | ||||||| |||||||| |||||||| ||||||||||| |||||||| || || || ||||| || |||||||||||||| || || ||||||  ||| ||| |||
-----------------gtacataacttttctcaaggattacaggatacaaaaaaattggcttgatctttgctctcttacaatcccttcccgtgttttgt-----ctgttcagGTCAAAAGTGTGTTTGGTGCTAAAATGTTTGCCCTTGGGGTCGTGGTTAAAATTCCAGTGCCAAAACAAACAGCCAAGACCAATTTCCAAGTGACAACTG

upper sequence: GLYMA17G16630.2 (Glycine max), 3'ss of exon 8
lower sequence: PP1S54_156V6.1 (Physcomitrella patens), 3'ss of exon 9
---------------------------------------------------gtttgaaattttacatgttggatatccattctcttgtt--gatatgccatcctccacttggctatccatttacatgttggatatccatttatttt-ttcagtacatatttttcagGTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGATTCCTGTTCCAAAACAAACAGCAAAAACAAATTTCACAGTTACATCTG
                                                   || | |||||    |   |   |  |   |   | | |  |||||   ||  |     || ||     || |   ||        |    |   | |||  |||      ||||||| || ||||| ||||| || ||||||||||||||||| || || |||||| | |||||||| || || ||||| ||  | |||||    || || ||||
gtgagatggatagccctcacgctgcgacgaacagtactctgttgatagtgtgtcttaaattcagtaacattagttccagatgcatggctacgatatagaatgtttagaatgcct---tgttgatgcgtcaacacgtcgccaacagtgttcgatactgcacgttcagGTCAAGAGTGTATTTGGGGCCAAAATGTTTGCACTTGGAGTGGTGGTCAAGGTGCCTGTTCCCAAGCACACAGCCAAGGCTAATTTTCAGGTGACCTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325028|gb|GR834453.1|GR834453
EST:     TGCCAACCATCAAGGAACTTGGTCGATCCCGGATAGAAGTGAACGTTAAG                         GTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
genomic: TGCCAACCATCAAGGAACTTGGTCGATCCCGGATAGAAGTGAACGTTAAGgtttgaaatt ... tatttttcagGTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
EST: gi|19346229|gb|BM891109.1|BM891109
EST:     TGCCAACCATCAAGGAACTTGGTCGATCCCGGATAGAAGTGAACGTTAAG                         GTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG
genomic: TGCCAACCATCAAGGAACTTGGTCGATCCCGGATAGAAGTGAACGTTAAGgtttgaaatt ... tatttttcagGTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctatccatttacatgttggatatccatttattttttcagtacatatttttcagGTAAAAAGTGTTTTTGGTGCAAAAATGTTTGCACTTGGGGTTGTAGTCAAGATTCCTGTTCCAAAACAAACAGCAAAAACAAATTTCACAGTTACATCTG
                                             tatttttc  CT-rich tract
                           atttattttttcagta  TA-rich tract