Sequence
atgc intronic sequence ATGC exonic sequence...ccttacttagttttaaatgtaatttttgtggttcatgattgttttgcacttttcatttctggacataatttccttgagtttattcttgaatgttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
Basic information
species | Glycine max |
transcript | GLYMA17G07760.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G07760.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G040945_T01 (Zea mays), 3'ss of exon 7
ccttacttagttttaaatgtaatttttgtggttcatgattgttttgcacttttcatttct-ggacataatttcc-ttgagtttattcttgaat--gttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
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--ttattccaaatagaatgtagcatgtcagcgtaata--tgaaaaatatttttgcttactcaaatattctctgcattgactattttcacaatttggttgggcagGACCAACATTTTGATGGAAATTCCTGGAGGGAACTGTTTGATGTTGTGATTGCGCAGGCAAATAAACCAACTTTCTATAACTCAGATCACCCATTCAG
upper sequence: GLYMA17G07760.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G23890.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------------------------------------------------------------------------------ccttacttagttttaaatgtaatttttgtggttcatgat-tgttttgcacttttcatttctggacataatttccttgagtttattcttgaatgttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
||| |||||| | || || || || | | |||| |||| | | | ||| | | | | || | ||| | |||| |||||| ||| | | | |||| || ||| ||||| |||||||||||||||||||| || ||||||||| | ||||| ||||||||||| || |||||
gtaattcacattattgaatagatctaaaactcttttattttctcgttggaatatcactagggacaatcatttcaacactttttttattttaattagttgtccataatcttcttacggccagttccatatttttttttttttaagtg-gttcatgacctttattgggttgtgctt-attgttcgttagGAATCTTTTGGCTTCGGAGATTCCTGGCGAGAACTCTTTGATGTTGTGATTGCTAAAGCAAATAAACCAGAATTTTACACATCTGAGCACCCTTTCCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcacttttcatttctggacataatttccttgagtttattcttgaatgttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
acataattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccttacttagttttaaatgtaatttttgtggttcatgattgttttgcacttttcatttctggacataatttccttgagtttattcttgaatgttgattagGATTCTCTGGATTGTAGAGACTCTTGGACGGAACTGTTTGATGTTGTGATTGCTAAGGCCAATAAACCACAGTTTTATACATCTGAGCATCCATTCCG
- - - - - - - - - - - -ttttgtg
- - - - - - - - - - - - - - - -ttcatga
- - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccttg