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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacattttccttttttcttcacacttgaggggaaacctttttgtcttggtacatcatttggagagtaacttcactaactatatcttgtgtttcattgtgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGAATGTCGAAGTCTATTAATTTCTGTTCACTTGCACAAATATCATCTCCTA

Basic information

species Glycine max
transcript GLYMA16G23710.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23710.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 3'ss of exon 8
gtaagacattttccttttttcttcacacttgaggggaaacctttttgt--cttggtacatcatttgga-gagtaacttcactaactatatcttgtgtttcattgtgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGAATGTCGAAGTCTATTAATTTCTGTTCACTTGCACAAATATCATCTCCTA
                              ||    ||||    |||    ||| | |   ||||||| |  |||   | | |||     ||| |||||| | ||    |  |||||| |||||||  |||||||||||||| ||||| |   |||||||||||||||| |||||||||||||    ||| ||||| ||||||||| ||  || 
--------------------------gtaagaaaataaactcgattgagatttgattctgaatttggatgtataatgactccaac-----cttatgtttcctggt---tttcagGCATCGATTGGATCGAGTACAAGAGGCAGTTGAAAAGGGCAGAGCAATGGAATGTTGAAGTCTATTAATGCTAGTTTACTTGTACAAATATCTTCATCTT

upper sequence: GLYMA16G23710.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0001g14450.t01 (Vitis vinifera), 3'ss of exon 8
gtaagacattttccttttttcttcacacttgaggggaaacctttttgtcttggtacatcatttggagagtaacttcactaactatatcttgtgtttcattgtgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGAATGTCGAAGTCTATTAATTTCTGTTCACTTGCACAAATATCATCTCCTA
                 | | | ||  |   ||  ||  |   ||| |||   || || | |     | | | ||  | |    | |||| |  ||| | ||    |  ||| ||||||||||| || ||||| ||||||||||||||    ||||| |||||||| |||||||||| || || |||   | |      ||  | |  |||
------------gtaaatatatccatgcaaaagttgattctgatttttctgaataaattact-----aatcattttgcaactgctctcttcttcttcctggt---tttcagGTATTGATTGGACCGAATACAAAAGGCAATTGAAGAAGAGCGAGCAGTGGAATGTTGAAGTCTATTGATATCAGTTGCATAGGGGGTTTACAAACATCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213606827|gb|DB974332.1|DB974332
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|8825895|gb|BE209625.1|BE209625
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|193546408|gb|FK501801.1|FK501801
EST:     AATGG-AAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|31307645|gb|CD392848.1|CD392848
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCCATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|120494376|gb|EH222543.1|EH222543
EST:     ACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: ACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|120532239|gb|EH260372.1|EH260372
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|8825902|gb|BE209632.1|BE209632
EST:     ATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTTGCCAA-GATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: ATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCT-GCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|20812596|gb|BQ297074.1|BQ297074
EST:     AATGGAAAAGGGTATTGATGACATAATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCTATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|209707439|gb|BW670952.1|BW670952
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|9899723|gb|BE608691.1|BE608691
EST:     GCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: GCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|193552571|gb|FK510364.1|FK510364
EST:     GGAAAAGGGTATTGATGTACTATTTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: GGAAAAGGGTATTGATG-AC-A-TTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|120495142|gb|EH223309.1|EH223309
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|17518600|gb|BM187642.1|BM187642
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|13479451|gb|BG508794.1|BG508794
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|213593048|gb|DB983392.1|DB983392
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|192296690|gb|FG991258.1|FG991258
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAG-CAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|209718137|gb|BW657796.1|BW657796
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|193642599|gb|FK594081.1|FK594081
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|15287226|gb|BI471117.1|BI471117
EST:     AATGGAAAAGGGTATTGATGACATAATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|154204813|gb|EV555075.1|EV555075
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
EST: gi|13479117|gb|BG508460.1|BG508460
EST:     AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATG                         GCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA
genomic: AATGGAAAAGGGTATTGATGACATTATGGTGTCATTGGCTGCCAAAGATGgtaagacatt ... tgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatttggagagtaacttcactaactatatcttgtgtttcattgtgtactatagGCATTGATTGGACTGAGTACAAGAGGCAATTGAAGAAATCAGAGCAATGGAATGTCGAAGTCTATTAATTTCTGTTCACTTGCACAAATATCATCTCCTA
                   cactaac  putative branch site (score: 1)
                      taactatat  TA-rich tract