1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atacagtaatgctccaagaagatgtgagaagcaagcatgatttacaaaagttgttttcttttgtcatgataacaaattcaggcttcttttccatgtttagGTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCAAGTGGTGCCCATGGAGACGTAACTCT
species | Glycine max |
transcript | GLYMA16G15580.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAG GTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCTEST: gi|9565017|gb|BE474526.1|BE474526
genomic: GGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAGgtttgacttt ... ccatgtttagGTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCT
EST: GGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAG GTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCTEST: gi|5509259|gb|AI855817.1|AI855817
genomic: GGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAGgtttgacttt ... ccatgtttagGTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCT
EST: GGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAG GTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCT
genomic: GGTTCAACAAACGCATATCCCTCGAACCACCCGTAATATTATCTTCAAAGgtttgacttt ... ccatgtttagGTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCT
aaaagttgttttcttttgtcatgataacaaattcaggcttcttttccatgtttagGTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCAAGTGGTGCCCATGGAGACGTAACTCT
tgataac putative branch site (score: 2)
cttcttttccatgttt putative PPT
ataacaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacagtaatgctccaagaagatgtgagaagcaagcatgatttacaaaagttgttttcttttgtcatgataacaaattcaggcttcttttccatgtttagGTAGGAAATCTTTTATACATATGCCGACAAAGTTGGCTTCTTCTGTGGCCTATCCATTTGCCTTCATTAAACCAAGTGGTGCCCATGGAGACGTAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - -tgctcca
- - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttctt