1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agttttactgttagttttactgattaaattatcttttaaagtaatgagccatatgaacaccttcatgattgtttctcttgttctttactcttgctttcagGTTCATCGGAAGACACTTCAAGTGCTTCAGGAGATAGCATATGGCTAGTTCTCTCTCCTTTTTTCTTATG
species | Glycine max |
transcript | GLYMA16G09430.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACATTTGGAGTGG GTTCATCGGAAGACACTTCAAGTGCTTCAGGAGATAGCATATGGCTAGTTCEST: gi|192301425|gb|FG994077.1|FG994077
genomic: GTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACATTTGGAGTGGgtatattctc ... ttgctttcagGTTCATCGGAAGACACTTCAAGTGCTTCAGGAGATAGCATATGGCTAGTTC
EST: GTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACATTTGGAGTGG GTTCATCGGAAGACACTTCAAGTGCTTCAGGAGATAGCATATGGCTAGTTC
genomic: GTTTATATGCTGGAACAGATTCTGGCATCACTGCACAACATTTGGAGTGGgtatattctc ... ttgctttcagGTTCATCGGAAGACACTTCAAGTGCTTCAGGAGATAGCATATGGCTAGTTC
gagccatatgaacaccttcatgattgtttctcttgttctttactcttgctttcagGTTCATCGGAAGACACTTCAAGTGCTTCAGGAGATAGCATATGGCTAGTTCTCTCTCCTTTTTTCTTATG
ttgtttctcttgttct CT-rich tract
atatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttactgttagttttactgattaaattatcttttaaagtaatgagccatatgaacaccttcatgattgtttctcttgttctttactcttgctttcagGTTCATCGGAAGACACTTCAAGTGCTTCAGGAGATAGCATATGGCTAGTTCTCTCTCCTTTTTTCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - -ctgttag
- - - - - - - - - - - - - - - - - - - - - - - - ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccttc