1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatattcatgttataactgtcatcatttttattgttgatattattgtattaccttttcattggatgttcgacaagtaactggatgtaatattatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG
species | Glycine max |
transcript | GLYMA16G09320.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACG GACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAEST: gi|13479098|gb|BG508441.1|BG508441
genomic: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACGgtatgttgca ... ttatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
EST: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACG GACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAEST: gi|193717070|gb|FK654698.1|FK654698
genomic: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACGgtatgttgca ... ttatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
EST: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACG GACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAEST: gi|57574399|gb|CX547374.1|CX547374
genomic: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACGgtatgttgca ... ttatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
EST: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACG GACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAEST: gi|7589867|gb|AW705632.1|AW705632
genomic: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACGgtatgttgca ... ttatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
EST: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACG GACGATGAGGTTGCAAATTCATGGTTAATCAATGAAGCATTCAGGACAGCAEST: gi|5606148|gb|AI900246.1|AI900246
genomic: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACGgtatgttgca ... ttatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
EST: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACG GACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAEST: gi|57574752|gb|CX547727.1|CX547727
genomic: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACGgtatgttgca ... ttatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
EST: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACG GACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
genomic: TACCAACTTGGCCACAACTGATGAATAGTAAATCTGCTCCACCATGCACGgtatgttgca ... ttatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCA
gtattaccttttcattggatgttcgacaagtaactggatgtaatattatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG
aagtaac putative branch site (score: 2)
atgtaatattatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattcatgttataactgtcatcatttttattgttgatattattgtattaccttttcattggatgttcgacaagtaactggatgtaatattatctgtagGACGATGAGGTTGCAAATTCATGGTTAAACAATGAAGCAGTCAGGACAGCAATTCATACTGCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC