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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctctgaattttttctctcaaaagtgcagtagtcttcgccagagctgcatgtataatttgtaaatcgactgcatatcaagccagaaggacttgttaatttagttagagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA

Basic information

species Glycine max
transcript GLYMA15G03200.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03200.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgctctgaattttttctctcaaaagtgcagtagtcttcgccagagctgcatgtataatttgtaaatcgactgcatatcaagccagaaggacttgttaatttagttagagggaattatggagtacaaaaaatttggcccaattttatgcttttgtta--actctgatttctgctttatgtaatc-agATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
                                                                         |  | ||||  |    |   | |   ||| || |   ||      ||||  |     ||||  ||   | |   |   |||  ||   |  ||||       || |  |  || |||| || ||| ||||  |||  || || |||||||| ||||| |||||||||||||| || ||||| ||||| |||||||||| ||| || |||||  | |
-----------------------------------------------------------------------gttaaacatca--ctttgaactcctacgaatata-tgccagtatgccatgg--tttcttaaatccggtttagtcgcagtttttaattgtgaaactgacaaacctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA

upper sequence: GLYMA15G03200.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
gtttgctctgaattttttctctcaaaagtgcagtagtcttcgccagagctgcatgtataatttgtaaatcgactgcatatcaagccagaaggacttgttaatttagttagagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
                                                                          |||  |     ||  ||   |   ||| | || ||          ||| |     |  ||||      |       || |||  |    || || ||| ||| |      ||||||| ||| ||||||| || || ||||||||||||||||| || || |||||||| || |||||||||||||||||||||| ||||||||||||| |||
--------------------------------------------------------------------------gcaagttgcatcaacagacatacctaactgagatatgaccttgattggtgcttttatcatttaataagaa---gaactattgaca----tgtttactgttttgt-----tagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACACGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
          aattttatgctttt  TA-rich tract