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...ctgcagggttagcacgtagaacaattgacaatttagtactgcaattgatttgttattcctgatttgcataaccctaaactgtttttgtctgcatttttagTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAG
species | Glycine max |
transcript | GLYMA13G44910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGGAGCTGAAATTGGATCGCTTGACTTTCTTAGAAACAATCCCCAG TTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAGEST: gi|6666944|gb|AW278403.1|AW278403
genomic: GTGCTGGAGCTGAAATTGGATCGCTTGACTTTCTTAGAAACAATCCCCAGgtgggttttt ... gcatttttagTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAG
EST: GTGCTGGAGCTGAAATTGGATCGCTTGACTTTCTTAGAAACAATCCCCAG TTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAG
genomic: GTGCTGGAGCTGAAATTGGATCGCTTGACTTTCTTAGAAACAATCCCCAGgtgggttttt ... gcatttttagTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAG
tgatttgttattcctgatttgcataaccctaaactgtttttgtctgcatttttagTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAG
ccctaaa putative branch site (score: 3)
cattttt putative PPT
attttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcagggttagcacgtagaacaattgacaatttagtactgcaattgatttgttattcctgatttgcataaccctaaactgtttttgtctgcatttttagTTTCAAGCATTACGCTCAATGGTGCAATCCAATCCGCAAATTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
ctgcagg
- - - - - -gcacgta
- - - - - - - - - - - - - - - - - - tactgca
- - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctaaa