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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttctctgcaacatagtagttatattttcagttgcaaacttcgtaactagtgttaaaagatgagcactgcctagtctgtcctaatacctgattattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTTCAAGACAACATTCCCATCTGTGCTTCAATATTATCACAGTATCTTGCCC

Basic information

species Glycine max
transcript GLYMA13G43830.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G43830.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g05250.t01 (Vitis vinifera), 3'ss of exon 8
-cttctctgcaacatagtagttatattttcagttgcaaacttcgtaactagtgt-taaaagatgagcactg----cctagtctgtcctaatacctgattattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTTCAAGACAACATTCCCATCTGTGCTTCAATATTATCACAGTATCTTGCCC
 ||  | ||    ||  ||   | |   |  | |     || |||   ||  || |  || ||    ||||     ||    | |  |  | | ||  |   |||||||||||| |||||  | ||  | | | |||  | |||||| |||||||| ||||||||||| |||||||||||||||||||| |||||| | || ||||
tctggtttgtgctat--taaccagaccatatgctttcc-ctacgtgtttatagtatgcaaaatttatactgggactctgaaatatttttgtgcatgcct---gcagATAGCATACCCCTCAAATGTGGAGGGCCTTGGCGCACAACTCCTCAAAGTCCAAGACAACATACCCATCTGTGCTTCAATATTCTCACAGCACCTGGCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335541|gb|CO979407.1|CO979407
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|20812966|gb|BQ297444.1|BQ297444
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAG-AAAAGACTTTGCTGA-CAACTTCTCAA-GTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|16347479|gb|BI973074.1|BI973074
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|58015307|gb|CX702049.1|CX702049
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|22524396|gb|BU083207.1|BU083207
EST:     GGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: GGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|192330994|gb|FK023135.1|FK023135
EST:     ATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: ATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|193606464|gb|FK557805.1|FK557805
EST:     GGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: GGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|23733497|gb|BU764945.1|BU764945
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|26048873|gb|CA785326.1|CA785326
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|7588129|gb|AW703931.1|AW703931
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|13788337|gb|BG650929.1|BG650929
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|9565685|gb|BE475194.1|BE475194
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|6070812|gb|AW100199.1|AW100199
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTT
EST: gi|151394458|gb|EV264329.1|EV264329
EST:     TTTTCTCATTCTCAAAAGCATTTGGAATGATGG-ATGGCGGGTTGGATAT                         ATAGCATATCCCTCTGAAGT
genomic: TTTTCTCATTCTCAAAAGCATTTGGAATGATGGGATGGCGGGTTGGATATgtaagtgccg ... attattgcagATAGCATATCCCTCTGAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagtgttaaaagatgagcactgcctagtctgtcctaatacctgattattgcagATAGCATATCCCTCTGAAGTAAAAGACTTTGCTGAACAACTTCTCAAAGTTCAAGACAACATTCCCATCTGTGCTTCAATATTATCACAGTATCTTGCCC
       ttaaaagat  TA-rich tract