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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcataatttttttgtctcaaaagtgcaatagtcttccccagagctgcatgtataactcgtaaattgactgcatatcaagcccgaaggagttgttaatttggtttgagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA

Basic information

species Glycine max
transcript GLYMA13G42180.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42180.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgctcataatttttttgtctcaaaagtgcaatagtcttccccagagctgcatgtataactcgtaaattgactgcatatcaagcccgaaggagttgttaatttggtttgagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
                                                                     |  ||  ||  |  | | |  | || |     || ||     | |  ||  |    || |     ||| | |  | ||| |  || ||  ||||   |   ||  |  |  |    |||| || ||| ||||  ||| ||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||||||| ||| || |||||  | |
-------------------------------------------------------------------gttaaacatcactttgaactcctacgaat-----atatgccagtatgccatggtttcttaaatccggtttagtcgcagtttttaattgtga-aactgacaaacct-ttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA

upper sequence: GLYMA13G42180.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
gtttgctcataatttttttgtctcaaaagtgcaatagtcttccccagagctgcatgtataactcgtaaattgactgcatat-caagcccgaaggagttgttaatttggtttgagggaattatggagtacaaaaaatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
                                                                | || |||  |  | |  ||  ||  |  ||| | | |  ||| || |  |   ||||    ||  || ||                 || |||  |    || || ||| ||| |      ||||||| ||| ||||||| || || ||||||||||||||||| || || |||||||| || ||||| |||||||||||||||| ||||||||||||| |||
----------------------------------------------------------------gcaagttgcatcaacagacatacctaactgagatatgaccttgatt-ggtgcttttatcatttaataagaa--------------gaactattgaca----tgtttactgttttgt-----tagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttggcccaattttatgcttttgttaactctgatttctgctttatgtaatcagATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAA
          aattttatgctttt  TA-rich tract