1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatcttgatttttgttgctatgttaaatgaagttgtgcaagtaattatgtaaaattgaataataacctttttattctggatgtgtcctagtaaatggcagGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG
species | Glycine max |
transcript | GLYMA13G41580.5 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAG GCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAEST: gi|192323380|gb|FK017081.1|FK017081
genomic: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGgtaataactt ... taaatggcagGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGA
EST: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAG TEST: gi|192323380|gb|FK017081.1|FK017081
genomic: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGgtaataactt ... taaatggcag-
EST: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAG TEST: gi|192323380|gb|FK017081.1|FK017081
genomic: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGgtaataactt ... taaatggcag-
EST: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAG TEST: gi|192323380|gb|FK017081.1|FK017081
genomic: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGgtaataactt ... taaatggcag-
EST: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAG TEST: gi|192323380|gb|FK017081.1|FK017081
genomic: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGgtaataactt ... taaatggcag-
EST: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAG TEST: gi|192323380|gb|FK017081.1|FK017081
genomic: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGgtaataactt ... taaatggcag-
EST: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAG T
genomic: GGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGgtaataactt ... taaatggcag-
tatgtaaaattgaataataacctttttattctggatgtgtcctagtaaatggcagGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG
taataac putative branch site (score: 1)
aaaattgaataataac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcttgatttttgttgctatgttaaatgaagttgtgcaagtaattatgtaaaattgaataataacctttttattctggatgtgtcctagtaaatggcagGCATTCAAATTAGCATCACTTTCTGGCTTTGCTGAACCCCTGGGAGTTATAATTGTAG
- - - - - - tgttgct
- - - - - - - - - - - - -aatgaag
- - - - - - - - - - - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgtg