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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagtatgatgttgtttctgttcaaatttatcatattataataaattgatctcttgacaaaattataatttttctgtgatgcactgatgcatgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAAATATTATATGGAAACCTTGCACCACAGGGTTCCGTTGCTAAAATTACTG

Basic information

species Glycine max
transcript GLYMA13G27810.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G27810.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0051g00830.t01 (Vitis vinifera), 3'ss of exon 8
gtatgagtatgatgttgtttctgttcaaatttatcatattata-ataaattgatctcttgacaaaattataatttttctgtgatgcactgatgcatgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAAATATTATATGGAAACCTTGCACCACAGGGTTCCGTTGCTAAAATTACTG
                  |    | || ||||  |   ||| | ||||| |||       ||| |   ||  || |  |    | |  |  |   |  |  || |||||||||| ||  | | ||| ||||| |||||||| |  ||| | ||||  ||||||||||| ||||||||| ||||||| ||||| ||||||||||
-----------------gtgaaatgcacatttcactgtttagatataaaatga-------acatacgcatgtttctcattgtttactgtcttttttcttctagCAAATAATAAGACCGTTGGCAAACCCCATAAAGAAGACTGGACACCTCCAAACTTTATATGGAAATCTTGCACCAGAGGGTTCTGTTGCAAAAATTACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207741614|gb|GD717708.1|GD717708
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|23734787|gb|BU765638.1|BU765638
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|207820136|gb|GD790014.1|GD790014
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|208154419|gb|GD952686.1|GD952686
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|14196091|gb|BE658016.2|BE658016
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|151400516|gb|EV270330.1|EV270330
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|16281629|gb|BI944586.1|BI944586
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|24136426|gb|BU926936.1|BU926936
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|208141207|gb|GD938251.1|GD938251
EST:     CTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: CTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
EST: gi|193654385|gb|FK596547.1|FK596547
EST:     AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAG                         GAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA
genomic: AAACCCTAGCTGAAAATGCAGAACTTGTCCCTCCTCTGTCCAACGGGCAGgtatgagtat ... catgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatctcttgacaaaattataatttttctgtgatgcactgatgcatgattcagGAAATAATAAGGCCAGTAGAAAATCCCATCAAGAAGACGGCTCACATTCAAATATTATATGGAAACCTTGCACCACAGGGTTCCGTTGCTAAAATTACTG
                                     cactgat  putative branch site (score: 3)
       tcttgacaaaattata  TA-rich tract