Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcattgtatagcccagcacaacatagcatttatcatgcctttcaactttcggagACCTGTGCTTGTTTATTGGTGTTATGAAATTGAGACATTTTTTATGGACATCGTAAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTCGGCGAG

Basic information

species Glycine max
transcript GLYMA12G05970.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05970.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G12960.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatcattgtatagcccagcacaacatagcatttatcatgcctttcaactttcggagACCTGTGCTTGTTTATTGGTGTT---ATGAAATTGAGACATTTTTTATGGACATCGTAAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTCGGCGAG-----
|||||   |  || || || | |   |  ||||| | || |     |  | | ||    ||    |     ||  |  ||   | |||||   ||  || ||||||||||| || ||  |||| |||||||||||||| ||||| |||||||||   |||     
gtatcgaagagtaaccaagaaaagtgtgacattt-ttat-caaagaagatattggttctcttgattctgaaatctgcatttccagGAAATCCCGATGTTCTTTATGGACATAGTTAATGCTTCACACAGCTATGCAACTGGAGGAACATCAGTCAAAGAGTTCTG

upper sequence: GLYMA12G05970.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G12950.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatcattgtatagcccagcacaacatagcatttatcatgcctttcaactttcggagACCTGTGCTTGTTTATTGGTGTT---ATGAAATTGAGACATTTTTTATGGACATCGTAAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTCGGCGAG-----
|||||   |  || || || | |  ||  ||||| | || |     |  | | ||    ||    |     ||  |  ||   | |||||   ||  || |||||||||||  | ||  ||||||||||||||||||||||||| ||||||||| | |||     
gtatcgaagagtaaccaagaaaagtatgacattt-ttat-caaagaagatattggttctcttgattctgaaatctgcatttccagGAAATCTCGATGTTCTTTATGGACATTTTTAATGCTTCTCACAGCTATGCAACAGGAGGAACATCAGTCAGTGAGTTCTG

upper sequence: GLYMA12G05970.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
---------------gtatcattgtatagcccagcacaacatagcatttatcatgcctttcaactttcggagACCTGT--GCTTGTTTATTG-GTGTTATGAAATTGAGACATTTTTTATGGACATCGTAAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTCGGCGAG-----
                || | |    | |   |    ||  |   ||| ||||        ||   | | |   || |  | |   | |||| |||  | | ||| | |||||| || |||||||| || ||||| ||||| ||||||||||| |||||||||||||| || |||     
tgattaattaattgtataacttctgtttgaaaatttgaatgtgtaattcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcattgtatagcccagcacaacatagcatttatcatgcctttcaactttcggagACCTGTGCTTGTTTATTGGTGTTATGAAATTGAGACATTTTTTATGGACATCGTAAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTCGGCGAG
                                              ctttc  CT-rich tract
                            atttatcat  TA-rich tract