1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgctgtcagtggtttttcttgtcatgtgtactgttaactacattctatactgataatttcctttcggggtttctatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAATTAAGATATTTGTAATGCTCTACACCAATATAGAAAGAAGTGGAACTT
species | Glycine max |
transcript | GLYMA11G34840.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|254320117|gb|GR831033.1|GR831033
genomic: CAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|151411948|gb|EV281759.1|EV281759
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|193593981|gb|FK546223.1|FK546223
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|151396616|gb|EV266493.1|EV266493
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCEST: gi|192320522|gb|FK011932.1|FK011932
genomic: AGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAA-GAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTC
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|208340390|gb|GE137044.1|GE137044
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAAATTTGCTGAAGAG GNGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|193728284|gb|FK665054.1|FK665054
genomic: AAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: GTTCTAACTAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|151405191|gb|EV275005.1|EV275005
genomic: G-TC-AAC-AACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGACTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|208300303|gb|GE097632.1|GE097632
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATGCCAAGAATTTTCAEST: gi|193563080|gb|FK519513.1|FK519513
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACA-TTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGEST: gi|193624022|gb|FK572992.1|FK572992
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAG
EST: GACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAACAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|192320523|gb|FK011933.1|FK011933
genomic: GACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAAGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGAEST: gi|151412057|gb|EV281869.1|EV281869
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGAEST: gi|42723157|gb|CK769056.1|CK769056
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|193385026|gb|FK351942.1|FK351942
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|6746980|gb|AW317436.1|AW317436
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|208061577|gb|GD860481.1|GD860481
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: CAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAEST: gi|9987096|gb|BE661204.1|BE661204
genomic: CAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
EST: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAG GTGTTACAAAGAGAAGCAAGAT-AGGCTGATGTTTATACCAAGAATTT-CA
genomic: AAGGTCAACAACGACCGCGGACAACAATTTTGATAAAATTTGCTGAAGAGgtacgctgtc ... tatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCA
tactgttaactacattctatactgataatttcctttcggggtttctatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAATTAAGATATTTGTAATGCTCTACACCAATATAGAAAGAAGTGGAACTT
tactgat putative branch site (score: 2)
tttctatcttcc putative PPT
tatactgataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctgtcagtggtttttcttgtcatgtgtactgttaactacattctatactgataatttcctttcggggtttctatcttccagGTGTTACAAAGAGAAGCAAGATTAGGCTGATGTTTATACCAAGAATTTTCAATTAAGATATTTGTAATGCTCTACACCAATATAGAAAGAAGTGGAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA