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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcaatgatattttgttctcttataaggggggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattgggatgattttgtgcttttttactaatgatgtctgattatataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA

Basic information

species Glycine max
transcript GLYMA11G13330.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G13330.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G30710.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgcaatgatattttgttctcttataaggggggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattggg-atgattttgtgcttttttactaatgatgtctgattatataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA
                             |      |    | | |||   ||   ||  |  || ||| |||  |   ||  |   |      || |      ||||    | |   ||| |  |   ||    |  |   ||||| |||||| |||||||||  || || |||||||| ||| | |||||||||||||| || ||||||||||| || ||||||| ||| ||||| ||  | |
-----------------------------gttaaacatcactttgaactccta--cgaatatatgccagtatgccatggtttcttaaatccggtttagtcgcagtttttaattgtgaaactgacaa-acctttgaacttttctagATCCCATTCAATCTCATCAATCGACTATGGGACACTTATCTTGCTGAAGGAGATGCGTTGCCAGACTTCCTGGTGTATATATATGCTAGCTTTCTCTTGA

upper sequence: GLYMA11G13330.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0094g00070.t01 (Vitis vinifera), 3'ss of exon 8
gtttgcaatgatattttgttctcttataaggggggaagttttctcaacatataattgataacttgacagaatggaaacattggtctgagataaattgggatgattttgtgcttttttactaatgatgt-ctgattatataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA
                                 | |||||   |||||| | |       || | || ||      || ||| |  | |      |   || ||||  |        |||| |||  |  | | | | |  ||||||||| ||| ||||  | || |||||||||||||||||| | || || |||||||| || ||||| ||||| || |||||||||||||| || ||| |||
---------------------------------gcaagttgcatcaacagacat------acctaactgagatatgaccttgattggtg-----cttttatcatttaataagaaga-actattgacatgtttactgttttgttagATACCTTTCAATCTTGTTACCCGCCTTTGGGACACATATCTTGCGGAGGGAGATGCGTTGCCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTTTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529818|gb|EH257952.1|EH257952
EST:     AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAG                         ATACCATTCCATCTCATCACACGCCT
genomic: AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaatg ... atataattagATACCATTCCATCTCATCACACGCCT
EST: gi|192328709|gb|FK022523.1|FK022523
EST:     AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAG                         ATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGA
genomic: AATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGgtttgcaatg ... atataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaattgggatgattttgtgcttttttactaatgatgtctgattatataattagATACCATTCCATCTCATCACACGCCTTTGGGACACATATTTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATTTGCCAGCTTCCTTCTAA
                                      tctgattatataatta  TA-rich tract