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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctatctctatctattattaataactgcttgctatattcatccatgaagctgatacaataatattcaattgaattatcagTGGGACATTCTATCCAACGGGGGTCTAGTTCAAGAATTAGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT

Basic information

species Glycine max
transcript GLYMA11G00570.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 8
--------gtatctatctctatctattattaataac-tgcttg---------ctatattcatccatgaagctgatacaataatattcaattgaatt-atcagTGGGACATTCTATCCAACGGGGGTCTAGTTCAAGAATTAGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT
         |    ||   ||   |   || ||| | || ||          | |  ||| ||| | |     |  | ||  | ||||  | | ||   ||||||||||| || || || || || |||||||||||  | ||||| ||||| ||||| || ||||| ||||||||||||||| |||||||||| |||
attccaagattaagattcataaggaaggttcatagcatgattatgaaagaaaccaccttcttccgtaagatctaaccgat--ttttcatataattttgacagTGGGACATCCTTTCAAATGGAGGACTAGTTCAAGAGATGGCACACATAGCTAATGGCCGGGATCCAGGCAACTGTGTCTCTCTACTTCGAGTGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgctatattcatccatgaagctgatacaataatattcaattgaattatcagTGGGACATTCTATCCAACGGGGGTCTAGTTCAAGAATTAGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAAT
                      agctgat  putative branch site (score: 4)
                         tgatacaataatattc  TA-rich tract