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gttagacattgacatatacttaatgctaagtgtatcaatttctcttttccatttggatgcttcgggaatgccttttattccagatgtttatgtacatgtaaaaactaaaaagtcaatgttggcatttgcatactaaaaggctacctttttcagGCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTATAGGATGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCT
species | Glycine max |
transcript | GLYMA10G43740.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAG GCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTATEST: gi|213614752|gb|DB980618.1|DB980618
genomic: GTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAGgttagacatt ... cctttttcagGCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTAT
EST: ATGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAG GCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTATEST: gi|8669187|gb|BE190294.1|BE190294
genomic: GTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAGgttagacatt ... cctttttcagGCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTAT
EST: GTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAG GCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTAT
genomic: GTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAGgttagacatt ... cctttttcagGCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTAT
taaaaactaaaaagtcaatgttggcatttgcatactaaaaggctacctttttcagGCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTATAGGATGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCT
tactaaa putative branch site (score: 1)
ctacctttttc putative PPT
atactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagacattgacatatacttaatgctaagtgtatcaatttctcttttccatttggatgcttcgggaatgccttttattccagatgtttatgtacatgtaaaaactaaaaagtcaatgttggcatttgcatactaaaaggctacctttttcagGCTAACATGTGGCTTGGCACCTTGTTGCTTGATCGTAGTGAAGACATTTATAGGATGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA