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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG

Basic information

species Glycine max
transcript GLYMA10G35280.2
intron # 8
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 8
lower sequence: AT2G39130.1 (Arabidopsis thaliana), 3'ss of exon 8
-------tgttatatcaattttagtcccac-atgtcatttctcttgcatttcta----aagtacttttacactgtgagcaaagaaagatgttttgt-acttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
           | ||   ||||  | |||| | ||  |   |||||||| |       |||||         |||    |  |    |    | || | |  | |   | ||  ||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||  |||  || |||  ||   ||                      
gtaagtggaccaaatatgttttctttccactacgtattggttcttgcatgttggttggaagtaaaaccgttttgttttaaccgtttcacagGTGGTCAATCCATT--TACCAAATATGCTTTGACCATATCTCCAGTAGCAATGAGTCTTGAGGAGTTGATACCATCAAGGCATATCAGGTCACATTGGTACG--------------------

upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 8
lower sequence: AT3G54830.1 (Arabidopsis thaliana), 3'ss of exon 8
tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgtt-ttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG-----------------------
                         || ||||        | ||  |||    || | | | | | |  | ||   |||     || |  |     | ||| ||||| |||||  |||||||||| ||||||||||| |||||||| ||||| |||||| |||  |||||   | | ||  | |||  ||| ||||  |                         
-------------------------gtaattt--------tgtcataagcttattcataatataaactgaaaattgtgtggccttaatagaaagaaagcacatatgctttgacattatctccagTTGCAATGAGTCTTGAGGAGTTAATACCATCAAACTATGGGAAGTCACGTTTCTACGCAATCGCCATTAGAAGTGCATTAGCCATCTCTACTCTGCTCGT

upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 3'ss of exon 10
--------tgttatatcaattttagtcccacatgtcatttctcttgcatttctaaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
           || | || ||    ||   ||| |  ||  | ||   ||| |  | |  ||||| |    ||  ||  | |||   ||| | ||||| |||   ||| |||||||| || || |||||||| |||||||||||||| |||||||| || ||||||||  |||| ||| |  | ||| | ||| |||| |||||    
cagatgaagagtaaagcatttgagctctttcatttttttctttttttctttttttactttttttaaa----gaagaagaacagaaaatttttccttaattagagCCACATATGCATTAACCATGTCTCCAGTAGCAATGAGTCTGGAAGAGTTGATCCCTTCAAACCAATCCAAATCTCACATGTATGCAATCCTCATTAGAAC----


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtacttttacactgtgagcaaagaaagatgttttgtacttaactagcatcacGTATGCATTGACTATATCTCCAGTGGCAATGAGTCTGGAGGAGTTGATACCGTCAAACCATGCCAAGTCTTATCTATATTCCATCTTCATCAGAACAGGG
                                     gtacttaac  putative branch site 
     actttta  TA-rich tract