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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcttttaacttgtatacatagtggaaacatgcaaaaaggctctctgtttttcaaaaaaaaaaaaaaactagaaaactaatgggtgctaatccaggatcatccctttctctgtttacagGATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTAGCTACGCTCAGTGGTCACTCTAAAAAG

Basic information

species Glycine max
transcript GLYMA10G26870.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845950|gb|BF071224.1|BF071224
EST:     ACAAAACAAACAAACAAGGGATTATATCTCTTGATATCCTTTATTCTAAG                         GATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGA
genomic: ACAAAACAAACAAACAAGGGATTATATCTCTTGATATCCTTTATTCTAAGgtatttcttt ... ctgtttacagGATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGA
EST: gi|14008547|gb|BG725151.1|BG725151
EST:     ACAAAACAAACAAACAAGGGATTATATCTCTTGATATCCTTTATTCTAAG                         GATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGA
genomic: ACAAAACAAACAAACAAGGGATTATATCTCTTGATATCCTTTATTCTAAGgtatttcttt ... ctgtttacagGATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaactagaaaactaatgggtgctaatccaggatcatccctttctctgtttacagGATTTAATTGCAACTGGAGGTATTGATACAAATGCTGTTATTTTTGACCGACCATCAGGACAGATATTAGCTACGCTCAGTGGTCACTCTAAAAAG
                    tgctaat  putative branch site (score: 2)
                                 tcatccctttctctgt  putative PPT
        aaaactaat  TA-rich tract