Sequence
atgc intronic sequence ATGC exonic sequence...acaagcttgtagtggtttattatgctgaagaaaatatgtggtttaacttctaaagaaataaatttggataaacaatgataatttcctggatgaaattcagGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
Basic information
species | Glycine max |
transcript | GLYMA10G02040.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 8
acaagcttgtagtggtttattatgctgaagaaaatatgtggtttaacttctaaagaaataa-atttggataaacaatgataatttcctggatgaaattcagGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
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ttggtttaggattactttgaaacagagtgttaattccatgctttacctaaggcgttcctttcatttatttaaataccta-aatccaatctgtctttttcagATTTGATGCCAAAATAGCTGCTGCAGTGGCTGAGGAAACAAACCTACCCTTTGTGACAGCAGAGAACAAGTTTGAAGCTTTG
upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 8
lower sequence: AT2G47510.2 (Arabidopsis thaliana), 3'ss of exon 9
--acaagcttgtagtggtttattatgctgaagaaaatatgtggtttaacttctaaagaaataaatttggataaacaatgataatttcctggatgaa--------------attcagGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
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gtatatctcatttctaattttatttccataattccatcccaggttcatctctcctaaatttgatgttttattagtgggctttgtccactgtagtaacactagtaatatctgtacagGTTTGATGTAAAGATAGCTGCTGCAGTAGCTGAAGAAACAAACTTGCCATTTGTCACTGCAGAAAACAAGTTTGAAGCTCTG
upper sequence: GLYMA10G02040.2 (Glycine max), 3'ss of exon 8
lower sequence: AT5G50950.3 (Arabidopsis thaliana), 3'ss of exon 7
acaagcttgtagtggtttattatgctgaagaaaatatgtggtttaacttctaaagaaataaatttggataaacaatgataatttcctggatgaaattcagGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
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------------------------gtatatctcgtttctagttttatatccattccgatttcatcctactggtaacactagta--ctatatgca---tagGTTTGATGTAAAGATCGCTGCTGCAGTAGCTGAAGAAACAAACTTGCCATTCGTCACCGCAGAAAACAAGTTTGAAGCTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207780421|gb|GD750774.1|GD750774EST: CTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACAAAGAAGGG GTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTT
genomic: CTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACAAAGAAGGGgtatgtatgc ... tgaaattcagGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttctaaagaaataaatttggataaacaatgataatttcctggatgaaattcagGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
ttctaaa putative branch site (score: 2)
taaagaaataaatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acaagcttgtagtggtttattatgctgaagaaaatatgtggtttaacttctaaagaaataaatttggataaacaatgataatttcctggatgaaattcagGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTG
- - - - gtagtgg
- - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - tgtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaac