1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagaaaactgatcccctgtagatcaatcaacattttctgctttcacgatttggttttgtcttagtttattgtcggctgcattagtagcctttttcctcctacattttttatgtcctttaattttccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGACACACCATCTGTACCTCTCTGGCTGTAGTGGGAGGAAGCATGCTGGCAT
species | Glycine max |
transcript | GLYMA09G38640.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAAGAEST: gi|18038713|gb|BM307007.1|BM307007
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGAEST: gi|193487115|gb|FK450528.1|FK450528
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: GAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGAEST: gi|8402143|gb|BE057777.1|BE057777
genomic: GAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCA CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGAEST: gi|208091234|gb|GD889279.1|GD889279
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
EST: TAACATTCCTTGCTGA-TGGGGTGACCGTAGCCAGATAGCGACAATTGCA CTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
genomic: TAACATTCCTTGCTGAGTGGGGTGACCGTAGCCAGATAGCGACAATTGCAgtaagaaaac ... ccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGA
attagtagcctttttcctcctacattttttatgtcctttaattttccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGACACACCATCTGTACCTCTCTGGCTGTAGTGGGAGGAAGCATGCTGGCAT
ctttaat putative branch site (score: 4)
ttttttatgtccttta CT-rich tract
attttttatgtccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaaactgatcccctgtagatcaatcaacattttctgctttcacgatttggttttgtcttagtttattgtcggctgcattagtagcctttttcctcctacattttttatgtcctttaattttccttctgcagCTGGCAACCCACAAAAATGCAATTGGAGTAGCAGTTGGGGCCACTATAGGACACACCATCTGTACCTCTCTGGCTGTAGTGGGAGGAAGCATGCTGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG