1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ataccattttatcattttacagattcaatatgtaaatattttcatgattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGGTGG
species | Glycine max |
transcript | GLYMA09G37020.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTEST: gi|13790160|gb|BG652751.1|BG652751
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|18712556|gb|BM522662.1|BM522662
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTEST: gi|18720947|gb|BM523284.1|BM523284
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
EST: AGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCACATCCCAAG GTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTT
genomic: AGAATTCAACAGGAATGAGGATGGCCAAACTTTTAGAGGCACATCCCAAGgtatcatggc ... ctattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTT
gattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGGTGG
ctttaat putative branch site (score: 4)
tttaattacatacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataccattttatcattttacagattcaatatgtaaatattttcatgattgagtcctgtatctgatgtgacttggctttaattacatactactattggcagGTGAAGCGGGTCTACTATCCAGGCTTGCCGAGTCACCCTGAACATGAGCTTGCCAAGAGGCAGATGACTGGTTTCGGTGGTGTTGTCAGTTTTGAGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG