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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaatttatttctacatatgtgaataacaaaatgtgttacatatgtaatatttggcattacatgtgactttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT

Basic information

species Glycine max
transcript GLYMA09G25200.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G25200.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G077222_T01 (Zea mays), 3'ss of exon 4
--------------------------------------------------------------------------------------------------------gtagtaatttatttctacatatg--tgaataacaaaatgtg-ttacatatgtaat-atttggcattacatgtgactttc-tggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT
                                                                                                        ||   |  | ||| |  | |     | |||    |  | || |  | || || || |||  |     ||  | | | || ||||  |     |||| |||  | |||||||||||||| || ||||| || || ||||| ||||| ||||||||||| |||||||  || || || ||||||||| | | ||| 
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcctatttcatattcttcatacgtttaaggtcattgcctcttgctgttaaattttcagttttgctctcttaggtgattattctgttaaccaacttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCCAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA

upper sequence: GLYMA09G25200.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G140874_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------------------------------------------------------------------gtagtaatttatttctacata-tgt-gaataacaaaatgtg-ttacatatgtaat-atttggcattacatgtgactttc-tggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT
                                                                                                        ||   |  | ||| |  | |  |||  |||    |  | || |  | || || || |||  |     ||  | | | || ||||  |     |||| |||  | |||||||||||||  || ||||| || || ||||| ||||| ||||||||||| |||||||  || || || ||||||||| | | ||| 
gtgcatatctattattcctttgtatcagtagacctcccaagtgtttgttgcaaatatgcagtatggtcccatttctcttttgtcatatttcatattcttcatacgtttaaggtcattgcctcttgctgtcaaattttcagttttgctctcttaggtgattattctgttaaccaccttattctcgtggtttccatacagGAACACTTTCTCAAAAGTGTATCTAGCAATGTATATTGATAATGTCACTGAACTTGCATTTGACGATGTCACACCTGAAGATCCTGATTTTCCATTCATA

upper sequence: GLYMA09G25200.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G23890.1 (Arabidopsis thaliana), 3'ss of exon 4
--------gtagtaatttatttctacatatgtgaataacaaaatgtgttacatatgtaatatttggcattacatgtgactttctgg--------taacttgtt--agGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT
          |  | ||| ||  |   | ||       |||||| |  | | |||||| ||    |    |    ||  ||| ||         |||||  ||  || | ||||   ||||||||||||||||| ||||| || || ||||||||||||||||| ||||||||| | |  ||||| |||||||||||||||||||||
gtatactttcatgattttgttagtgtttctggtggggtcaaaatatccttcgtatgtattagaaagtgaaattcatgcatttatgtgtgttctttaactctttgcagAAACACAACCTCAAAAGTGTATCCTGCTATGTATATTGAGAATGTTACTGAGCTTGCTTTTGATGATATTACTCCCGAAGACCCTGATTTTTCTTCCATT

upper sequence: GLYMA09G25200.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G52410.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagtaatttatttctacatatgtgaataacaaaatgt-gttacatatgtaatatttggcattacatgtgactttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT
|||   ||  |    |   | |   | |    |||  | || | |||| | |  |     |  || ||  | | |||       |  ||||| | |||  |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||| | |  || || || ||||||||| | | ||||
gtaactatcaaaaaatctctttcctactcttgaaacattgtgaaatatttcac-tgccttacaacgtgaaaatatcttcattggttatagGAACTCAGCATCAAAAGTATATCCTGCCATGTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTTTCCATTCATT

upper sequence: GLYMA09G25200.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv16s0050g00600.t01 (Vitis vinifera), 3'ss of exon 5
------gtagtaatttatttctacatatgtgaa-taacaaaatgtgttacatatgtaatatt--tggcat-tacatgtgactttctggtaacttgtt--agGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT
       | |||   |   ||  ||| ||     || ||| ||   || || ||   || ||  |  ||| |   |   | |||||    | |  ||  ||||  ||||||||||| || ||||| || ||||||||||  ||| ||||||| ||||||||||||||| | |  || || |||||||||||||| ||||||
ctgtagcttgtagagtgcatcagcatctgaaggctaccaacataaatt-cacattggatgttgataacatgtgattaataatttctatccattccttgtagGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgttacatatgtaatatttggcattacatgtgactttctggtaacttgttagGAGCACAGTTTCAAAAGTGTATCCTGCCATGTACATAGACAATGTTACTGAGCTTGCATTTGATGATGTCATCCCCGAGGACCCTGATTTTTCTTCCATT
                                         tggtaac  putative branch site (score: 2)
     ttacatatgtaatatt  TA-rich tract