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...cgttaaaataaaactgtgcaaacatttacttatttcataatgatttggacaatacgatctatgctgtttagttcataatgatgtgttccctgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGCTTGAGTTAAGTGGTAACAATGCAATAATTGTCATGGATGATGCAGACA
species | Glycine max |
transcript | GLYMA09G08150.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|193415066|gb|FK378822.1|FK378822
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|14258546|gb|BG881454.1|BG881454
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAA GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTEST: gi|193397845|gb|FK364187.1|FK364187
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTT
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|254341577|gb|GR852714.1|GR852714
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|208236818|gb|GE029296.1|GE029296
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|19938590|gb|BQ081792.1|BQ081792
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|6069735|gb|AW099357.1|AW099357
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|208056617|gb|GD853792.1|GD853792
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTEST: gi|27427065|gb|CA938585.1|CA938585
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGT
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGEST: gi|4396268|gb|AI495265.1|AI495265
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
EST: TAGCAAAAGACACCCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAG GTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
genomic: TAGCAAAAGACACTCGCATTCCCCTGGTTTCATTTACTGGAAGTTCAAAGgtatgttatg ... tgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTG
tggacaatacgatctatgctgtttagttcataatgatgtgttccctgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGCTTGAGTTAAGTGGTAACAATGCAATAATTGTCATGGATGATGCAGACA
ttccctgtt CT-rich tract
tgttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttaaaataaaactgtgcaaacatttacttatttcataatgatttggacaatacgatctatgctgtttagttcataatgatgtgttccctgttatatagGTTGGCTTGATGGTCCAGCAAACAGTTAATGAGAGATTTGGCAAATGCTTGCTTGAGTTAAGTGGTAACAATGCAATAATTGTCATGGATGATGCAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - aaaataa
- - - - - -aactgtg
- - - - - - - - - caaacat
- - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgct