1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taaaaagcgtcatattaatttttgtagattttgttgtattttgcatcaatagaatttgatacattgcacaaaccaacaccattcaactacaattgttcagGATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAA
species | Glycine max |
transcript | GLYMA08G11980.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTATCATGGATCTCCTCTAGGCCATGG-TTTGGAAAGTTCGTTCAG GATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGGEST: gi|58018254|gb|CX704996.1|CX704996
genomic: CTTTGTATCATGGATCTCCTCTAGGCCATGGTTTTGGAAAGTTCGTTCAGgtatttgtcc ... aattgttcagGATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGG
EST: TAGGCCATGGTTTTGGAAAGTTCGTTCAG GATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGAEST: gi|192295038|gb|FG986757.1|FG986757
genomic: TAGGCCATGGTTTTGGAAAGTTCGTTCAGgtatttgtcc ... aattgttcagGATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGG
EST: CTTTGTTTCATGGATCTCCTCTAGGCCATGGTTTTGGAAAGTTCGTTCAG GATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGG
genomic: CTTTGTATCATGGATCTCCTCTAGGCCATGGTTTTGGAAAGTTCGTTCAGgtatttgtcc ... aattgttcagGATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGG
tcaatagaatttgatacattgcacaaaccaacaccattcaactacaattgttcagGATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAA
atttgat putative branch site (score: 5)
aatttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaaagcgtcatattaatttttgtagattttgttgtattttgcatcaatagaatttgatacattgcacaaaccaacaccattcaactacaattgttcagGATGCAGGTGTTACTATTTTGGGAACAGTTCCAAGCTTAGTAAAAACTTGGAAGAGTACACAATGCATGGAGGGGTTGGATTGGACAAAAATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactac