1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cctctgaataataatataacatgatagctagatggatattttgtagataatctaaaaatattttaaatatattcttacaatctacatgtttctattgtagGTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATTATG
species | Glycine max |
transcript | GLYMA07G28990.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACAGCGCTTTCCTGTTGAATCCAAAGAGCGACGTAAGAAGCTGCAAGAG GTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATTEST: gi|209712880|gb|BW679157.1|BW679157
genomic: TACAGCGCTTTCCTGTTGAATCCAAAGGGCGACGTAAGAAGCTGCAAGAGgtatgcaatt ... tctattgtagGTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATT
EST: CGACGTAAGAAGCTGCAAGAG GTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATTEST: gi|19936698|gb|BQ080978.1|BQ080978
genomic: CGACGTAAGAAGCTGCAAGAGgtatgcaatt ... tctattgtagGTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATT
EST: TACAGCGCTTTCCTGTTGAATCCAAAGGGCGACGTAAGAAGCTGCAAGAG GTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATT
genomic: TACAGCGCTTTCCTGTTGAATCCAAAGGGCGACGTAAGAAGCTGCAAGAGgtatgcaatt ... tctattgtagGTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATT
gataatctaaaaatattttaaatatattcttacaatctacatgtttctattgtagGTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATTATG
ttcttac putative branch site (score: 2)
tttctatt putative PPT
taaaaatattttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctctgaataataatataacatgatagctagatggatattttgtagataatctaaaaatattttaaatatattcttacaatctacatgtttctattgtagGTTGGCTATGTGACAACCATATGTTTTTTATGTTTTCTTGTCAGATGCATTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-ctctgaa
- - - - - - - - - -catgata
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatgt