1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...agtggatcaaaataaataaaaaaatgtatatttatatacctaaggatttattttttttattttactcatgaagtttgatatgctctaatttctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAGAGAAGAGGTGAT
species | Glycine max |
transcript | GLYMA05G30830.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGA ATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTTEST: gi|208281624|gb|GE073772.1|GE073772
genomic: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGAgtgagtattt ... tctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTT
EST: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGA ATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTTEST: gi|208133221|gb|GD932162.1|GD932162
genomic: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGAgtgagtattt ... tctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTT
EST: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTT-AATGCAGAAGA ATACTTAAAACTGGTGAAGAAGCATGGGTTGGAAATTTCACAGCCTGGTTTEST: gi|193438151|gb|FK402170.1|FK402170
genomic: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGAgtgagtattt ... tctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTT
EST: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTT-AATGCAGAAGA ATACTTAAAACTGGTGAAGAAGCATGGGTTGGAAATTTCACAGCCTGGTTTEST: gi|193304306|gb|FK270335.1|FK270335
genomic: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGAgtgagtattt ... tctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTT
EST: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAGGA ATACTTAAAACTGGTGAAGAAGCACGGGTTGGAGAEST: gi|208187995|gb|GD986809.1|GD986809
genomic: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGAgtgagtattt ... tctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGA
EST: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGA ATACTTAAAACTGGTGAAGAAGCATGGGTTGGAAATTTCACAGCCTGGTTT
genomic: ATTTTTATATGGGATGAAGACCTGGGTGTTGAACATTTTAATGCAGAAGAgtgagtattt ... tctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTT
atttattttttttattttactcatgaagtttgatatgctctaatttctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAGAGAAGAGGTGAT
ctctaat putative branch site (score: 3)
tttctatc CT-rich tract
ttttttttattttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtggatcaaaataaataaaaaaatgtatatttatatacctaaggatttattttttttattttactcatgaagtttgatatgctctaatttctatcacagATACTTAAAACTGGTGAAGAAGCATGGGTTGGAGATTTCACAGCCTGGTTTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAGAGAAGAGGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - aaaataa
- - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgctc