1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtcctctgtattttgttttaatatattttactcaatttttcatttctccgattctgttctttatccactgaggtgaggatcacttctttctgttctcaccttgcatatattctatactgcagATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTATCAACGTAATGAAATATTGGAATTTGAGAAAATTCTGAAG
species | Glycine max |
transcript | GLYMA05G14170.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCC ATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTAEST: gi|8404263|gb|BE059897.1|BE059897
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTA
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCC ATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTAEST: gi|9898913|gb|BE607881.1|BE607881
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTA
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCC ATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTAEST: gi|9899182|gb|BE608080.1|BE608080
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTA
EST: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCC ATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTA
genomic: ATGTTGATGGAGTCTGAAGTAAATCCATTTGATGGGCAGGAAGCTAAGCCgtaagtcctc ... tatactgcagATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTA
ctgaggtgaggatcacttctttctgttctcaccttgcatatattctatactgcagATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTATCAACGTAATGAAATATTGGAATTTGAGAAAATTCTGAAG
ttctcac putative branch site (score: 2)
atatattctatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcctctgtattttgttttaatatattttactcaatttttcatttctccgattctgttctttatccactgaggtgaggatcacttctttctgttctcaccttgcatatattctatactgcagATACAAGAATGACCCTGAAATTTTGGTGATGACTAACTTAATAGCGGCTTATCAACGTAATGAAATATTGGAATTTGAGAAAATTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG