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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagtcaattctacaaatggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG

Basic information

species Glycine max
transcript GLYMA04G37810.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G459746_T01 (Zea mays), 3'ss of exon 12
------gcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaa---tcataaatatgtttctaagtcaattctacaaatggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
        ||   || | ||  |||    ||      |   |||   |||  |||    |   |  |    ||||| |||| | |  || |       || ||||| |||||||||||||||||||| |||||||| |||| | || ||   || || ||||||||  |  ||
gtagtttgaaactttgaatttaactcataagcgaccggggccttgtattagttgagactacttttgtgttcatgttactaaatgagatcaatctcctttt-cagAATAAATGTAATGTTGGCTATGCTTTCATCAACATGACCAATGCTCAGCATATCATTCCATTTTATCAG

upper sequence: GLYMA04G37810.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G451716_T01 (Zea mays), 3'ss of exon 12
gcaagtatt----tatttggacttgctagttgattgattctttacttaaatgaagtaatcataaat---atgtttctaagtc--aattctacaaat----ggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
|  |||  |    |||| |   | | |||  ||| | |  || | || |      |  |  | | |   |||||| |  | |  ||   ||  |||      || ||||| || || |||||||| |||||||||||||| |||||| ||||||   | ||| |||||||  | |||
gtgagtggtctggtattagtcttggttagcagatagttctttaattttacctgcttctttgttacttgcatgtttgttggactaaacattaataatctccattttcagAATAAGTGCAATGTTGGTTATGCATTCATCAACATGATCAATCCTGACAATATTGTTCCATTTTATAAG

upper sequence: GLYMA04G37810.2 (Glycine max), 3'ss of exon 8
lower sequence: EFJ29695 (Selaginella moellendorffii), 3'ss of exon 7
gcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagtcaattctacaaatggttg--cagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
                                         | |  | | |  | || || | | |  ||         |  |   ||  ||  ||||| ||||| || |||||||||||||||||||| |||| ||| || |  || ||  | || ||  |||||
----------------------------------------gtgattttaggcgagcaaaagtgtttccctggtattgaccggcttttgcctgtgcagAATAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAG

upper sequence: GLYMA04G37810.2 (Glycine max), 3'ss of exon 8
lower sequence: EFJ28200 (Selaginella moellendorffii), 3'ss of exon 9
gcaagtatttatttggacttgctagttgattgattctttacttaaatgaagtaatcataaatatgtttctaagtcaattctacaaatggttg--cagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
                                         | |  | | |  | || || | | |  ||        ||  |   ||  ||  ||||||||||| || |||||||||||||||||||| |||| ||| || |  || ||  | || ||  |||||
----------------------------------------gtgattttaggcgagcaaaagtgtttccctggtattgatcggcttttgcctgtgcagAACAAATGCAACGTTGGCTATGCATTCATCAACATGACCGAGCCAGCTCACATCGTCCCCTTTTACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9563828|gb|BE473337.1|BE473337
EST:     TTTTCTGTATTTGCCAATTGATTTCAAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: TTTTCTGTATTTGCCAATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
EST: gi|7796615|gb|AW782012.1|AW782012
EST:     ATTGATTTCAAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: ATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
EST: gi|151407718|gb|EV277533.1|EV277533
EST:     AGCAATATCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: AGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
EST: gi|11273713|gb|BF324089.1|BF324089
EST:     AGCAATGTCGAGGAACTTATGATTGTCTGTATTTGCCAATTGATNTCCAG                         AACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA
genomic: AGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGgcaagtattt ... atggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaatgaagtaatcataaatatgtttctaagtcaattctacaaatggttgcagAACAAATGTAATGTTGGCTATGCATTCATCAATATGATCGATCCTGGACAAATTATTCCATTCCACAAG
           taatcataaatatgtt  TA-rich tract