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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattagtttaaagtttggttttggaaatctgtgtcccccattgtgttgcttaactaaatttattggcattgataatacctcttctcagGGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAATGGGAAAACATTTGTTGCAGACGCCGCTATTGTTGCTGTACCTCTTGGG

Basic information

species Glycine max
transcript GLYMA02G45140.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45140.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0028g01120.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtattagtttaaagtttggttttggaaatctg--tgtcccccattgtgttgcttaactaaatttattggcattgataatacctcttctcagGGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAATGGGAAAACATTTGTTGCAGACGCCGCTATTGTTGCTGTACCTCTTGGG
||||  || | | |  | | | ||  ||  ||| |     |    |  |   ||||| | |   ||||  |   ||| |||           |||||| ||||||||||| ||||  ||||||| ||| ||||| ||||| ||| |||||| | ||||||||||||| || || ||||||||||| ||  |||| 
gtattaatcaatattta-tatagtcctgttaatttaatcatgtatctgttcattgctcagccgcattttct---attcata-----------cagGGTTACAAAAATAGTAAGGCGTTATAATGGAGTCAAGGTAACAGTAGAAGATGGGAGATCATTTGTTGCAGATGCTGCCATTGTTGCTGTCCCCATTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452543|gb|BM953953.1|BM953953
EST:     TTCGCCTGGGACATAG                         GGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA
genomic: TTCGCCTGGGACATAGgtatgtatta ... ctcttctcagGGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA
EST: gi|151411092|gb|EV280903.1|EV280903
EST:     CCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCTGGGACATAG                         GGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA
genomic: CCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCTGGGACATAGgtatgtatta ... ctcttctcagGGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA
EST: gi|19346933|gb|BM891821.1|BM891821
EST:     CCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCTGGTACATAG                         GGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA
genomic: CCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCTGGGACATAGgtatgtatta ... ctcttctcagGGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA
EST: gi|4405605|gb|AI507754.1|AI507754
EST:     CCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCTGGGACATAG                         GGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA
genomic: CCTGTTATAAATACCCTAGCCAAGGGTCTTGATATTCGCCTGGGACATAGgtatgtatta ... ctcttctcagGGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccccattgtgttgcttaactaaatttattggcattgataatacctcttctcagGGTAACAAAAATAGTTAGGCAATATAATGAAGTAAAGGTGACAGTGGAAAATGGGAAAACATTTGTTGCAGACGCCGCTATTGTTGCTGTACCTCTTGGG
                                          tacctcttctc  CT-rich tract
                ttaactaaatttatt  TA-rich tract