1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaggattggtttatcacttttttgtacaagtatcataaattcataattctgttataatagtccttgttcaagaaaactgattgcacttcaaaattctcagGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATCATACCGGCCAAAGTTTAGATAAGATCAACCAGGATACAGACCGTGACT
species | Glycine max |
transcript | GLYMA02G01510.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAG GCTAATGAAATGCTGCATCACAAGGCAAATTTGAATGGATATCTCGCCTATEST: gi|208111368|gb|GD910094.1|GD910094
genomic: ATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGgcatgggcct ... aaattctcagGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTAT
EST: CGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAG GCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATEST: gi|15204414|gb|BI427182.1|BI427182
genomic: CGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGgcatgggcct ... aaattctcagGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTAT
EST: ATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAG GCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTAT
genomic: ATCAACCGCTTGGTGGTGCTCAAGGAGGGCAAACTGACATAGATATTCAGgcatgggcct ... aaattctcagGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTAT
attctgttataatagtccttgttcaagaaaactgattgcacttcaaaattctcagGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATCATACCGGCCAAAGTTTAGATAAGATCAACCAGGATACAGACCGTGACT
aactgat putative branch site (score: 3)
ttctc putative PPT
ttataatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggattggtttatcacttttttgtacaagtatcataaattcataattctgttataatagtccttgttcaagaaaactgattgcacttcaaaattctcagGCTAATGAAATGCTGCATCACAAGGCAAATCTGAATGGATATCTCGCCTATCATACCGGCCAAAGTTTAGATAAGATCAACCAGGATACAGACCGTGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcactt