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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattcttatttctgttctatgaatgaataagagtatatcttgttattgaataaaactgcaattaccttgaagatattacatcattggtgcatggatgtattgttacagTTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA

Basic information

species Glycine max
transcript GLYMA01G35950.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G423861_T01 (Zea mays), 3'ss of exon 7
gtatgcattcttatttctgttctatgaatgaataagagtatatcttgttattgaataaaactgcaattaccttgaagatattacatcattggtgcatggatgtattgttacagTTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
                  || ||  ||| || |   ||| | | | |||||| ||  || ||     |   |  || |||   | | |   ||      |  |  |  | |||||||| |||||||| |||||||| || || ||| |||| |||||||||||| | || || |||||  |||||||||||| ||||||||||||  |    |
------------------gtact--gaaggattgccagtttgtgt-gttattcaagtaatct-----tggttcaaaaatagagc-taacaagta-----acattgttctgcagTTGCAACATGATTACATTTTGGGAAACTATCCTGTTGGCAGGGATGATGCTTCACAACTCTCTGCTCTGCAAATCTTGGTTGAGATTGGATTCATCGACA

upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G070273_T01 (Zea mays), 3'ss of exon 6
gtatgcattcttatttctgttctatgaatgaataagagtatatc---ttgttattgaataaaactgcaattaccttgaagatattacatcattggtgcatggatgtattgttacagTTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
|||    ||  || |  |  |   |   | | | |  |  |  |   ||||   | | |   |||  | | |  |||     |  | |    |     ||     | ||  | |||||||| |||||||| |||||||| || || ||| | || |||||||||||| | || || |||||  | || ||||||| ||||||||||||  ||   |
gtactggttgatagtattcatagctagctaactgaaggactgccagtttgtgtgttattgttactcaagtaatattgtttccagaatagatctaacaaatat-catttttctgcagTTGCAACATGATTACATTTTGGGAAACTATCCTGTCGGCAGGGATGATGCTTCACAACTCTCTGCTCTTCAGATCTTGGTTGAGATTGGATTCATTGATA

upper sequence: GLYMA01G35950.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0044g02020.t01 (Vitis vinifera), 3'ss of exon 7
gtatgcattcttatttc----tgttctatgaatgaataagagtatatcttgttattgaataa--------aactgcaattaccttgaa--gatattacatcattggtgcatggatgta-----------ttgttacagTTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
||||| | ||||||||     |  | | |||   | |  || ||    |||    || | ||        ||||      |  |||||  |  | ||  | |||   || | ||| ||           ||||| |||||||| ||||| ||||| ||||| ||||| ||| ||||||| ||||||||||| || || ||||||||||| || |||  ||||||||||||  || |  
gtatgtaatcttattttaaagtaatttgtgagcaactctgattaatatttgaatatgtacaactttgactaactatgggaattttgaacaggcagtatctgatttaagctttgatctaacttgtttttattgtttcagTTGCAACATGACTATATATTGGGCAATTATCCTGTTGGAAGAGATGATGCTGCACAACTATCTGCATTGCAGATTTTGATTGAGATTGGATTCATTGGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208062489|gb|GD858117.1|GD858117
EST:     ATCCAATGTTTTTGCAGTTGTCCTATGTACAA                         TTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCT
genomic: ATCCAATGTTTTTGCAGTTGTCCTATGTACAAgtatgcattc ... attgttacagTTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgcaattaccttgaagatattacatcattggtgcatggatgtattgttacagTTGCAGCATGATTATATTTTGGGTAATTACCCTATTGGAAGGGATGATGCTGCCCAGCTTTCTGCATTGCAAATCTTGGCTGAGATTGGATTTGTTAGAA
                aagatatta  TA-rich tract