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...tccttaaaatgacaaatgtttgggtttagaatgatctctggtatgtttgatgcttaaatttctctactaagtgttgaccattttatgttttctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCTTGAGATGGAAAGTCAACACGCCAAGGGATTACCTTCACATTTTACTAC
species | Glycine max |
transcript | GLYMA01G22470.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TANGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCEST: gi|21889499|gb|BQ742712.1|BQ742712
genomic: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
EST: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCEST: gi|19453276|gb|BM954686.1|BM954686
genomic: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
EST: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCEST: gi|31474099|gb|CD416127.1|CD416127
genomic: TAGGAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
EST: GAGG-GAAGAAATGACTATGACTTTGCTCTACCTCATGAATGAACAT CATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
genomic: GAGGAGAAGAAATGACTATGACTTTGCTCTACCTCATGAATTAACATgtaagtatga ... tctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTC
tttgatgcttaaatttctctactaagtgttgaccattttatgttttctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCTTGAGATGGAAAGTCAACACGCCAAGGGATTACCTTCACATTTTACTAC
tgttgac putative branch site (score: 3)
ttttatgttttctc putative PPT
attttatgttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttaaaatgacaaatgtttgggtttagaatgatctctggtatgtttgatgcttaaatttctctactaagtgttgaccattttatgttttctcatgcagCATTAGCCGCCAAGAGAAACAGATATCAGAGGCAGAAATCCTTAATGGTTCTTGAGATGGAAAGTCAACACGCCAAGGGATTACCTTCACATTTTACTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - -gtttggg
- - - - - - - - - - - - - - - - - - - -ggtatgt
- - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac