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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggaatgcttactttcttttgtttcaatatattttctaactttcttgtgtagttccatatattgaccaattatgtttctatgcttcagctgaaatgtactttttttctattgaatcatttgaattacagATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGACTAAATACACCTCATACAGTAGTCAATCAAACTATGTCTATCATACCTAT

Basic information

species Glycine max
transcript GLYMA01G01740.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23733915|gb|BU765174.1|BU765174
EST:     GACTCTCAATTGAAATCTGGGGGCAGGCAGGATTCTTTTGAAG                         ATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGAC
genomic: GACTCTCAATTGAAATCTGGGGGCAGGCAGGATTCTTTTGAAGgtttggaatg ... tgaattacagATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctatgcttcagctgaaatgtactttttttctattgaatcatttgaattacagATGAACCATCTCAAAATGGCAGTTTGGCATATACTGCTCAAAATGGGGGACTAAATACACCTCATACAGTAGTCAATCAAACTATGTCTATCATACCTAT
                         tttttttctattgaat  TA-rich tract