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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgatactaaacttttgtttgcttaaagttcctgagcactgtaatttacttttttaatttacactcacctaggtttatatactatatgtagttactgtgtgagatgtttactatgttagctatttatttgtctggttccactgttatagctcaaatgtaacactttttcagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGAGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTGTGATTG

Basic information

species Glycine max
transcript GLYMA20G24470.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24470.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os10g36490.1 (Oryza sativa), 3'ss of exon 6
gtgtgatactaaacttttgtttgcttaaagttcctgagcactgtaatttacttttttaatttacactca--cctaggtttatatactatatgtagttactgtgtgagatgtttactatgttagctatttatttgtctggttccactgttatagctcaaatgtaacactttttcagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGAGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTGTGATTG
                  ||||| || |||  |    | | | |||   |   ||| | |||  |   |  |||  ||||  || || ||  |    |  |||  ||     | ||  || | | |    | | |        ||  ||||  ||     ||      | |  ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||  || |  | ||| ||||  ||||  | ||| ||||||| ||  
------------------gtttg-ttgaagaactcatgtagtttaagacatcatttgactttttaaatattcctcagtttccat-ctctacctttcaaaagtgcaag-----tcctgagtgaaccacaagtatat--------acc-ttatgacttttgggt------tctgaagGGTGATGGTTCCTGGCATGGAGGCTGCTTGGCTTTGGCTGAACTTGCTCGTAGGGGACTGTTGCTGCCTTCTAGCTTTCCTGATGTTATTCCTGTTATAA

upper sequence: GLYMA20G24470.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G60740.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgtgatactaaacttttgtttgcttaaagttcctgagcactgtaatttacttttttaatttacactcacctaggtttatatactatatgtagttactgtgtgagatgtttactatgttagctatttatttgtctggtt--ccactgttatagctcaaatgtaacactttttcagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGAGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTGTGATTG
                                                                ||||      ||  ||||   |    | | |   |||| |  |   | | ||   |   ||  |||  ||| | |  |   | || | | |   |||  |      ||||||| ||||||||||||||||| || || || || || |||||||| ||||||||||| || || || |||   ||| ||||   ||| || || || ||||
--------------------------------------------------------------gtactcgtt---gtggatatggca-gcatggcttgcgtgt-acttaaatccaattaaaagcatgcatt-atctagctgacagttattgtggttttcatggca------ttcagGGAGATGGTTCATGGCATGGGGGTTGTTTGGCCTTAGCTGAACTGGCTCGTAGAGGGTTACTTTTGCCTAGAAGTTTTCCACTAGTCGTCCCAGTTATTG

upper sequence: GLYMA20G24470.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0048g00470.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------gtgtgatactaaacttttgtttgcttaaagttcctgagcactgtaatttacttttttaatttacactcacctaggtttatatactatatgtagttactgtgtgagatgtttactatgttagctattt---atttgtctggttccactgttatagctcaaatgtaacactttttcagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGAGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTGTGATTG
                         || || | | ||| ||||||   |  || |  |   |    ||| |   |   ||  || |||||   |||| ||  ||        |||    |      | |  | ||   |   ||| || | |   ||||       |  | ||||||| || | | || | |  |||  |||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| || |||||||||||    ||  ||||||||||||| || ||  |||
gtatgctggtcagttgcctccttttgtctg-ttccaaaattttgtaaccaaaatggccagcaatcatgttacaaaagcttagaagttacatatacctgggaataccattgccatgcccatgactcttcatttcttcctttgtttatctttgtccaattttgagaaattaaatgttata-ctgatacgtcatatgtttgtagGGAGATGGTTCATGGCATGGGGGCTGCTTAGCTTTGGCTGAACTGGCACGTAGGGGATTGCTCTTACCAATCAGCTTTCCCAAAGTTGTACCGGTTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctatttatttgtctggttccactgttatagctcaaatgtaacactttttcagGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGAGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTGTGATTG
                                      atgtaac  putative branch site (score: 3)
                                            cactttttc  CT-rich tract
     atttatttgt  TA-rich tract