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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgttcgctttgtttgttcatattgaacagtgtgcttattttgaacatgacagttataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG

Basic information

species Glycine max
transcript GLYMA19G39210.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39210.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os10g27230.2 (Oryza sativa), 3'ss of exon 7
gtaagtcgttcgctttgtttgttcatattgaacagtgtgcttattttgaacatgacagttataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG
||  || |    |    ||| || ||  | |    ||||     | | |  ||  ||| |  | | |        |||  |||| || |||||| | ||||| ||||| ||||| ||||  ||||| ||||||||||||||||| |||||||| || |||||| | || || ||
gtctgt-gccatcacattttctttatgct-agttttgtgtaacatcttagaatttcagattgacactgtatggcttttgcagGTTCAAACTCTCCTAAAAGGGTTGGAAAAAATAGCTGTTAGTGCGGACATTCCAATGTTGGTCTGTGGGGATTTCAATTCAGTCCCTGGGAG

upper sequence: GLYMA19G39210.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G124051_T01 (Zea mays), 3'ss of exon 8
--------gtaagtcgttcgctttgtttgttcatattgaacagtgtgcttattttgaac-atgacagttataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG
              |  || || ||| |  |   ||   |   | |  ||  ||| |   ||||   | ||   || |    ||||   || | || || ||| | ||||| ||||| ||||| ||||  ||||||||||||||||||||||| ||||| || |||||||||| ||| |||||
gttcaaatacttccccctccctctgtataatttcataacattttataatttctttaactgatgaatctcatggcttgcaaactcttgc-agATTCATACCCTCCTAAAAGGGTTGGAAAAAATAGCTGTTAGTGCAGACATTCCAATGTTGGTCTGTGGAGATTTTAATTCAACTCCTGGAAG

upper sequence: GLYMA19G39210.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G118467_T04 (Zea mays), 3'ss of exon 7
gtaagtcgt-tcgctttgtttgttcatattgaacagtgtgcttattttgaacatgacagttataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG
      ||| |  ||   || | |  |  |      | | || |||||   || || |   |||| | |    || ||   |||| || || ||| | |||||||||||||| || |||| ||||||||||||||| |||||||| ||||| || || || ||||  || || ||
---gtccgtatgactacattcgctagtggtctctgttat-ctcattttttccaggataacaataactatgt--tttttcacagGTTCATACCCTCCTAAAAGGATTGGAGAAGATAGCTGTCAGTGCAGACATTCCTATGTTGGTCTGTGGAGATTTCAACTCAACCCCTGGGAG

upper sequence: GLYMA19G39210.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G043509_T02 (Zea mays), 3'ss of exon 8
gtaagtcgttcgctttgtttgttcatattgaacagtg-tgcttat--tttgaacatgacag--ttataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG
             |  || ||  || |||    |||| |   | |  | | ||  |  |||  | ||||      |  | |||  |||| || || ||||| |||||||||||||| || |||| ||| ||||||||||| |||||||| ||||| || || || ||    || || ||
------------gtccgtatgaccacattcgctagtggtttctgttatctcaattttccaggataataataccttcagtttttacagGTTCATACCCTCTTAAAAGGATTGGAGAAGATAGCTGTCAGCGCAGACATTCCTATGTTGGTCTGTGGAGATTTCAACTCGCCCCCTGGGAG

upper sequence: GLYMA19G39210.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G58560.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaagtcgttcgctttgtttgttcat-attgaacagtgtgcttattttgaacatgacagtt-----ataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG
||  ||| ||   | |  ||||  |  |     |||  | |  ||| | | ||| ||  ||     ||||   | |    |    ||||| |||||  | ||||| ||| |||||||||| |||||||||||||| ||||||||| | || ||||| || || ||  || | || |  ||
gttggtctttatttctcattgtaaaagaactctcagatttcggattctta-catcactattgatccataatgattcttgcccaaatagGTTCACACATTATTGAAGGGACTGGAGAAAATAGCTGCCAGTGCAGATATTCCAATGCTTGTGTGTGGAGATTTCAACACAGTACCTGCGAG

upper sequence: GLYMA19G39210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 7
-----------------------------------gtaagtcgttcgctttgtttgttcatattgaacagtgtgcttattttgaacatgacagttataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG
                                   ||  | | ||   | ||  ||| | |||    ||||      |  |  |   |   |  ||||   ||     || | | |||| || |||||||| ||||| ||||| ||||| |||||||||||||||||||| ||| |||||||||| || ||||||||| |||| |||||
gtaattaattttattttatttttgagtgagcttgagtggggctttttttatgcgtgtgcttatgtctcagttaatcaaact--attttattatgtatattcttgtttgtcatatcagGTTCATACTCTCTTAAAAGGTTTGGAAAAAATAGCTGCCAGTGCAGACATTCCCATGCTGGTTTGTGGCGATTTTAATTCAGTTCCTGGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaacagtgtgcttattttgaacatgacagttataaatttccccttctttttagGTGCACACTCTCTTGAAAGGATTGGAGAAAATTGCTGCCAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAATTCCAGGAAG
                                      tttccccttcttttt  CT-rich tract
                           acagttataaattt  TA-rich tract