Sequence
atgc intronic sequence ATGC exonic sequencegtatgaactgcattttcttttaatctttcctactgtatttctgttttgtactaagtgataaactttgctattttgatactttcccttatttcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
Basic information
species | Glycine max |
transcript | GLYMA19G34430.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G34430.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G159295_T02 (Zea mays), 3'ss of exon 7
---------------------------------------------------------------------gtatgaactgcattttcttttaatctttcctactgtatttctg--ttttgtactaagtgataaactt-tgctattttgatactttcccttatttcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
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gtaagttggcacagctgattttaagttttacagcatcacaataaactagcaaagcctgcccttatgttgctgttcacatgggtattttttaaattctaatgttgtaagagaaattttagggtttagctctgtgttgacgttgtatttgtttgtgacaccttttcagTTGAGAGAGTACATCGATGACACGGAAGATTACATCAATATCCAG
upper sequence: GLYMA19G34430.2 (Glycine max), 3'ss of exon 7
lower sequence: PP1S76_98V6.2 (Physcomitrella patens), 3'ss of exon 8
---------------------------------------gtatgaactgcattttcttttaatctttcctactgtatttctgttttgtactaagtgataaactttgcta--ttttgatactttcccttatt----tcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
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gtaagtatcctatcttctatcaggatcgatggtcatccgatccttactgctattttggtttctttgtgttgatttctcgctatttgatttttatcttctagctttttaaaatactcacattttgcattcttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10232059|gb|BE800947.1|BE800947EST: GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
genomic: GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactg ... cttatttcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgttttgtactaagtgataaactttgctattttgatactttcccttatttcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
ttttgat putative branch site (score: 4)
tactttcccttatttc CT-rich tract
tattttgatacttt TA-rich tract