Sequence
atgc intronic sequence ATGC exonic sequencecatgttcattacctaagagggttggcattttgttgcttcatccttcagtgtagttctcacctttctgttttggttgtagaTGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGG
Basic information
species | Glycine max |
transcript | GLYMA18G31780.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G31780.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g01310.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------------------catgttcattacctaagagggt-tggcattttgttgcttcatccttcagtgtagttctcacctttctgttttggttgtagaTGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGG
|| | ||| | | || | ||| | | | || |||| || | || | || || ||||||| |||||||||| |||||||||||||| || ||||||||||| ||
gcacacatctttccccatacttgttctgtgttcccttcccatccgttttttctgaactctacttccttttttacggtggtaagttatactgttgctagatttaattcttgccatgttgct---attacagGTGGATCTTCAATTTCTCTAACATACATTGCTTCTGAGAGGATCATTCCAGG-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15813360|gb|BI785635.1|BI785635EST: TACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATAAACCCAGA TGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGG
genomic: TACTCTTATATTTCTTTACTCAAACACTTTCTTCCAATCATAAACCCAGGcatgttcatt ... tggttgtagaTGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttgttgcttcatccttcagtgtagttctcacctttctgttttggttgtagaTGGATCTGCAATTTCTCTTACATACATTGCTTCAGAAAGGATCATTCCTGGG
ttctcac putative branch site (score: 2)
ttctcacctttctgtt CT-rich tract