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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaatggacgatatatataaaattaaatactttttctattagttcatgtttatgctttaataattacactccacatatataatttatatgtatatgcattagCAGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATGCAACTTCAAAGCCTGGCAATAATCAAGCGTTGGGGAATCACGCCAC

Basic information

species Glycine max
transcript GLYMA17G18640.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561238|gb|CD487076.1|CD487076
EST:     GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCG                         CAGAATCCTCAGGTAACGCGCCAGATCACAATCTGGATTTAAGTCTGGGCA
genomic: GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCGgtaagcaatg ... tatgcattagCAGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCA
EST: gi|16346744|gb|BI972339.1|BI972339
EST:     GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATA-C-                         C-GAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCA
genomic: GGCTGTAACGAATTTTGATCCCAGCATCTACAACAATGAGCTCAATACCGgtaagcaatg ... tatgcattagCAGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttatgctttaataattacactccacatatataatttatatgtatatgcattagCAGAATCCACAGGTAACGCTCCAGATCACAATCTGGATTTAAGTTTGGGCAATGCAACTTCAAAGCCTGGCAATAATCAAGCGTTGGGGAATCACGCCAC
       ctttaat  putative branch site (score: 4)
        tttaataattacactc  TA-rich tract