Sequence
atgc intronic sequence ATGC exonic sequencegtataccattatctatgaatatccatttattttattggagaataacataaatcttagggcctaccatttatgatcctatgaccaatttctttgcaaacagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
Basic information
species | Glycine max |
transcript | GLYMA17G11220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g55410.1 (Oryza sativa), 3'ss of exon 8
gtataccatta--tctatgaatatcca-tttattttattggagaataacataaatcttagggcctaccatttatgatcctatgaccaa--tttctttgcaaacagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
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gtatatttttgatcttatcagtggctaatatgtgaaaatacaaagttgtgttggatccagtggctagttggaatgagc-tgtaactaaactttcttctatggcagAGGCTACCGGATGGTGTCCGTTTGAGAGGGGACATTCATGTCTTGCTGCTGGGTGATCCATCAACAGCAAAATCACAG
upper sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G450055_T01 (Zea mays), 3'ss of exon 8
gtataccattatctatgaatatccatttattttattggagaataacataaatcttagggcctaccatttatgatcctatgacc--aatttctttgcaaacagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
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gtatgc-attcttatcaagcccctatatgttttgt---agaaaaaaatgctcctccatttgccctaattatgtccttattcttcgaactactctcactgcagAGGCTACCTGATGGTGTACGTTTGAGAGGGGACATTCATGTCTTGCTTCTGGGTGACCCATCCACAGCAAAATCACAG
upper sequence: GLYMA17G11220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0149g00130.t01 (Vitis vinifera), 3'ss of exon 7
gtataccattatctatgaatatccatttattttattggagaataacataaatcttagggcctaccatttatgatcctatgaccaatttctttgcaaa--cagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
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------------------gtatactttgaacttgtacctttttaacata---ttta-----tatagtttatcaaagcataatcacttcctctgtaagtgcagAATTTACCAGATGGTGTGAAATTAAGAGGTGATATCAATGTGCTGCTTTTGGGGGATCCATCCACTGCTAAATCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cataaatcttagggcctaccatttatgatcctatgaccaatttctttgcaaacagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
tttctttgc CT-rich tract
atttatgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtataccattatctatgaatatccatttattttattggagaataacataaatcttagggcctaccatttatgatcctatgaccaatttctttgcaaacagAATTTGCCTGATGGAGTCCGGTTAAGAGGTGATATCAATGTATTGCTTCTGGGTGATCCATCTACAGCAAAGTCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG